Msca018049.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:235247144-235247716[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-09 2.7e-06 28.9 0.1 2 39 10 47 9 50 0.92
Sequence Information
- Coding Sequence
- atgAAGAGAAAGTATCAAGCATATAGTGAGGCTTCATTAGCGAATGCTTTAAAAGCAATTCGTAAGGGAGCTATGAGCTATCGCTCAGCGAGTAAGGAGTTCAATGTTCTTATGACTACTTTACACGATAGgattcaagtgaaaaaaaaggacGGGCTTCAACGAATGGGTGCTCCTACAGTACTTACAGATAGTGAAGAACATCGCATCGTCGATTGGCTTTTGAATGTCGCTAAATGCGGGTTCCCACGAAAGGCAGACGAGCTATTAGATGTAGTTCAACAAATCGTTAAGGACGAAAACCGTCAAACGCCTTTCGTGAATGGTAGACCTGGCAAGAAATGGTATTACAGATTTTTGAATAGGCATAAGGAACTGTCTTTGAGGGAGCCCGAATCCTTATGTAAAGCCAGAGCCGTTATAACAGAAGAGTTCATCCGAAAATGGTTCCGAGACTTGGATAACTATTTGGTAGATAcgagttctcgagatattttgGATGATCCTTCACGGATTGttaatggtaaaaaaaaaactctactcAGGACGCTCCTTTACATGAATAAAGTGTAG
- Protein Sequence
- MKRKYQAYSEASLANALKAIRKGAMSYRSASKEFNVLMTTLHDRIQVKKKDGLQRMGAPTVLTDSEEHRIVDWLLNVAKCGFPRKADELLDVVQQIVKDENRQTPFVNGRPGKKWYYRFLNRHKELSLREPESLCKARAVITEEFIRKWFRDLDNYLVDTSSRDILDDPSRIVNGKKKTLLRTLLYMNKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00976386;
- 90% Identity
- -
- 80% Identity
- -