Msca023893.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:54960728-54962659[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-10 2.5e-07 32.2 0.0 5 39 19 54 16 59 0.90
Sequence Information
- Coding Sequence
- ATGGTACGAAATTACATTCGTAAGACGACGCGGCAGTCTTGGCAAGAATCACACATGAAATGTGCACTTGAAGCAGTTCTTAAAAATGAGATGGGGTTTAAAAAAGCTTGTCTTACCTTTAATGTTCCTAAGAGCACCCTTAGGGATAGATATAAAAAAGTAATCGACAAAACTAACACTCTTGAAAACTCCTCAAAAAAGTGCTCTCTTGGAACAATCAAAACCGTGTTTACAAAAGAGCAAGAGAAGGAATTATCTGAACACATAATTTTGCTCGAAAGTCGATTGTTTCCCATAACTATCAAGGATTTGCGTGAACTTGCATTCCAACTAGCAGagagaaataatatcaaaaatgACTTCGACAAGGAAACTGGGATGGCTGGATATAAGTGGGtgcaaaattttatgaaaagaaaTCCTAGCATTAGCCTTCGTAAGCCGGAAGGCACGTCTGGAGCCAGAGCCATGGGTTTCAATCGGGTATCTGTGGCTAAGTTTTTTGAGCTTTTGACAGAGCTAATGGATAAGTATCACTTCACGCCTGATCATATTTATAACGTCGACGAAACGGGCATATCAACGGTTCCAAAAAAAGTATCAAAAGTATTGGCTAAGAGAGGAAAACCTCAGGTTGGTACTCTAACCTCTGCAGAACGTggcaaaacaataacaattgaAATCTGCATGAGTGCTTCTGGACAGTTTATACCACCATTGTTTATTTTTCCTCGAGTCCGAGCGCACAGGCATGTAAACATTCTTGAGAGAGCTCCACCATGTTCAGTTGCTGTCTATCATCCAAGTGGTTGGATGCAGacagatttgtttttaacttggtTCGATCATTTCTTAAAGCATTCGAATCCAACTAAGGAAAACCCGGTTTTATTATTACTAGACGGGCATTCAACACATACCAAAAATCTGGAATTCATAAACAAAGCtcgagagaaaaatgtttttgttctaTGCTTTCCACCCCATTGTTCACATCGAATGCAACCCCTCGACGTTGCGTTTATGGCACCATTAAGTCAATATTATTCGTCTGAAGTCAAAAAATGGATGCGAACAAATTCACCATCAATGGTTACTGAGTATCAAATTCCTGAACTATTCGGCGTCGCTTACATGAAATCTGCAATTATTCAGACCGCAGTTAACGCATTCAAAAAGACTGGAATTTATCCATTAAACAGTGACGTGTATGAGGACTGGATGTTTGAACCAGCAGAAACCACCAACCAGCCTTTTTCTGAAGAACAATCTTCCACAGAAGTAGCTGAAGAGCTAATCACAAATTCTCCATCACAAGAAGTTTCTGAAGCTTCCCTTGGAAGGGCACGTTCAATTGAACCGCCTGCAACGACAATAATTTCCACTCAAGAAAACTATGTTAACACTGACTTCGTCGATGCCTTAGCTGCCCTAGACAACACTCCATCAACATCAGCATCAACAGCTACAGCCTTCATTTTATCTTCTCCAAAGGAGATTGTTAAGGTACCTTTTGGGAAGAGAGTTTCTTCGCAGAGAAAGTCAAGGAGGGGAAAAACGGCAATATTGACAAGTTCAACATATAAATCTGAGTTGGAAGCTCTAGTTGCTGCTACCAAAGATAAAAAAGAATGTCACCATAAAAACCGCCAAAAAATTAAGCGTAAGGCAAAAAGGACTGTTGCCGAAAGTGAGGCTGAGGATGCTAGTGTTGCAGATTGCAGTTGCATCTTCTGTTTGGAGCTTTATTCCAAATCAAACCCAACTGATGGCTGGATAAAATGCAGCACTTGTTCTGGGTGGGCTCACGAAGCTTGTGCTGGAGttggagaagaagaagatgtcaCATTTATGTGCGACTTTTGCAAACAGTAA
- Protein Sequence
- MVRNYIRKTTRQSWQESHMKCALEAVLKNEMGFKKACLTFNVPKSTLRDRYKKVIDKTNTLENSSKKCSLGTIKTVFTKEQEKELSEHIILLESRLFPITIKDLRELAFQLAERNNIKNDFDKETGMAGYKWVQNFMKRNPSISLRKPEGTSGARAMGFNRVSVAKFFELLTELMDKYHFTPDHIYNVDETGISTVPKKVSKVLAKRGKPQVGTLTSAERGKTITIEICMSASGQFIPPLFIFPRVRAHRHVNILERAPPCSVAVYHPSGWMQTDLFLTWFDHFLKHSNPTKENPVLLLLDGHSTHTKNLEFINKAREKNVFVLCFPPHCSHRMQPLDVAFMAPLSQYYSSEVKKWMRTNSPSMVTEYQIPELFGVAYMKSAIIQTAVNAFKKTGIYPLNSDVYEDWMFEPAETTNQPFSEEQSSTEVAEELITNSPSQEVSEASLGRARSIEPPATTIISTQENYVNTDFVDALAALDNTPSTSASTATAFILSSPKEIVKVPFGKRVSSQRKSRRGKTAILTSSTYKSELEALVAATKDKKECHHKNRQKIKRKAKRTVAESEAEDASVADCSCIFCLELYSKSNPTDGWIKCSTCSGWAHEACAGVGEEEDVTFMCDFCKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00976392; iTF_00976393; iTF_00334916; iTF_00974568; iTF_00974567; iTF_00974569; iTF_00694521; iTF_00694520; iTF_01356792;
- 90% Identity
- iTF_00976392; iTF_00976393;
- 80% Identity
- -