Msca022928.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- Clic
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:40033617-40051343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-11 4.6e-08 34.5 0.0 4 44 201 242 200 243 0.91 2 2 3.9e-08 5.2e-05 24.8 0.0 3 39 310 346 309 351 0.87
Sequence Information
- Coding Sequence
- ATGCGAACATACCAGCTCATCATCGTCACAAGAACCTGGCATTTCAAGCCTTTCTTAGTAAACGGCGATGGGCTCGCCATAATGGACACCAGCGCCACACAGTCCCAATTTCATGATGAGTATTGCAACCTGCTTTACTCCGAaGACGAGGTCGAAAGCATTGACAGTTATGAATCAGATGATTCAAAGTCAACTGTGCTAGAGCAACCAATACTGCCATTCGCATTATCATCCGTCGCAGAGAAACCACTACCGCAAGTAGTGTTACCACAGCCACCTCTCCCAGCAGTTCCACCAGATAGATTCGAAAATGATCAGTATACTATATTTGAACTGAAATGCGATAACCCTCCAATGTACAACTATGTAATTTCACATGCCAAAAATCCGCCATCTGATGTATTAAATCCAAGCCAAGATTTACCTTCAAATAACGCTGATGATGCGATTGAAGAAAAACCTACTCCGGCTCAAATGCCATATGTTATTAGTGTACAAATACCGGTAGAAAATGTAGAGCAGCCCATTGACAAGGATCATaataagaaaaggaaaagtaaaaaaaattcaacccaAACCAGAAAATCTGTGGCCCTCAAAAAACTGACTGAAGCTGTTGATGCTGTTGTAAATAAAGAGATGACCATCAGTAATGCTGCGAAGGTCTTTGCAGTGACGAAAAGTACTCTTTGGAGGGAGGTCAATAAACACACAAATCATCGGAAGAAAAAAGTTGACGAAGATCTCAATAAAACGATAGTTGCTCGTATTTGTGCGGGTGAATCGCTTTCAGCTATTTCAAGATCTCTCAAAGTGGCCAAGTCCACCATACACCTGCATAAAAGTCGACTTGCACAGAAAGGTCAGTTACCAGCTCATGTGACCGTTAAACCTTCTGTAGATCTGAAGGAACAACTTGAAATGAAGGATCGTATCATTCAAGCTTTTCGTGGCATCAGAGTAAATGGGATGTCTATGCGCTTTGCTGCAAAATTTTTCCAAGTACCACCATCTACATTGTGGAATCACGTTCGTCGTTTTCAAGCTCAACAAGCACAAGAGGCTAAATTGTCAAATGATGAGCCAGGTgtggaaaaagaaaacacagaTGACAATAGAGCAACGGAAAGTTCTCTAGAAGACGAAAGTCAAGATGAAGATGACGGCGATGAAGAATCTATTGGACCTAATGACGAAGTTCTTTCGAATGATTTTGATTTGATAGACACCTATTGCGATGCAATGAATCCAGCAAGTGAAGATGGTGACTTTTTGGCATCAACAATCGATGGAAGACGTAAGGGGGCCTGCCTATTTTGCCAAGAATACTTCATGGACTTGTACCTGTTAGCTGAACTGAAAACAATAAGCCTTAAGGTCACAACAGTTGATATGCAGAAACCTCCACCAGATTTCCGTACCAACTTTGAGGCAACACATCCGCCAATCCTAATTGACAACGGTCTGGCCATTCTTGAAAATGACAAAATTGAAAGGCACATCATGAAGAACATCCCCGGTGGATATAATCTCTTCGTGCAGGACAAAGAAGTAGCCACCCTGATTGAAAATCTGTACTCCAAATTGAAGCTGATGTTGGTCAAGaaagatgaaaacaaaaacaactcctTGTTGTCACATTTGAAGAAGATCAACGATCATTTGGCATCACGTGGAACACGCTTCCTTACAGGTGATACCATGTGTTGTTTTGATTGTGAACTGATGCCAAGACTTCAGCACATTCGAGTGGCTGGAAAGTATTTTGTCGATTTTGAAATACCAACCCATTTGTCATCATTGTGGCGTTACATGTATCACATGTATCAATTAGATGCCTTCACACAATCCTGCCCAGCCGATCAGGATATTATCAATCATTACAAACTGCAACAGATGCtcaaaatgaagaaacatgAAGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGATATTTCGGAATAA
- Protein Sequence
- MRTYQLIIVTRTWHFKPFLVNGDGLAIMDTSATQSQFHDEYCNLLYSEDEVESIDSYESDDSKSTVLEQPILPFALSSVAEKPLPQVVLPQPPLPAVPPDRFENDQYTIFELKCDNPPMYNYVISHAKNPPSDVLNPSQDLPSNNADDAIEEKPTPAQMPYVISVQIPVENVEQPIDKDHNKKRKSKKNSTQTRKSVALKKLTEAVDAVVNKEMTISNAAKVFAVTKSTLWREVNKHTNHRKKKVDEDLNKTIVARICAGESLSAISRSLKVAKSTIHLHKSRLAQKGQLPAHVTVKPSVDLKEQLEMKDRIIQAFRGIRVNGMSMRFAAKFFQVPPSTLWNHVRRFQAQQAQEAKLSNDEPGVEKENTDDNRATESSLEDESQDEDDGDEESIGPNDEVLSNDFDLIDTYCDAMNPASEDGDFLASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNSLLSHLKKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLSSLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -