Msca013409.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:158779432-158781292[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-13 1.4e-10 42.6 0.0 3 43 294 334 292 336 0.91 2 3 0.033 45 5.8 0.0 27 37 365 375 356 380 0.87 3 3 7.5e-16 1e-12 49.5 0.0 4 40 404 440 402 443 0.92
Sequence Information
- Coding Sequence
- atgaatcaCTTAAAATGGATGGGCCACACGGCGACCATCCTTGATATACAAAAAGCTTTGAAGAATGATCCAGCAACGTGTGACATTACACTTACCTGCAGAGGTAAATCTGTAAGAGCTAATCGTTTTGTTCTATGCTCCTGTAGTGATTTACTGCGTGATATTTTAAATGATGTGCCCGTTGGACAGGAGGCAACCATAATAGTGCCAGACATTAAAGGTTCACTCCTTGACAGTGTTTTGAGTTTCGTGTATATGGGAGAGACGAGCCTATCTTCAACAAATCTGTCAGACTTTCTAGAGGCTATCAACGTTCTTGGaataaaaagtgcaataagcttTGAATGTGCCAGCAGTTTTCACAGTACCAACATCAAGACTGTTACGGAAATGGCAGAGATGGAAGAGGAACTTATGGAAGCTGAACCAGAGCAAGAACTAGTTGAAAAGGACGATGAAGAGgaTCAAACAGGTCCAGAGGGTGGAAGTGTGCGTGAATTAGAGTTCCTTGAGGTCTACAACGAGCAAGAAAAAATCAGCTACACCATAGAAAATATCGCACCAAACAATCCAAATGAATATATTCTTACAGAAAGCTCTGGAACATTTACTCTTACACCAAATGCAAAAATAGAATCTAGTAGAGATGGCAACCTTGTAGAGAAGCAAGAAGATGATAATCAATTGATGGACCATTATGTTAACGATCCTATAGGGGACAGCAGCCAGTGTTCCAGCAACgaaatgaaagaaataaaacctGAAAAGAAACTCAAAGATGAGTTTAGTGGATTTCAAGCACTTAGCCCGGTAGAAAGTAAGGATGGCAAAGTAACAGCaaactatcaaaattttaatgaaaccCAATCGGCACGCGTAGAGGCATTAGAAAATGCAGTTCTGGCTGTTGTCGATGAAGGCATGAGTTTACAAAAGGCCGCAATTAAGTTCAACATATCAAAGACTGTACTGTGGAGAAGGGTAAAAAAGCACCCGTTGTATATGAAAACAGCCCGAGAGAATCCTTTAATTACCGCCGCCTGTGAACGTCTTAAAAATGGAGATTCATTAAAAAGTATCAGCCAGGCATTAGACATACCAATGTCCACTCTGCACAGACATAAAGTAAGATTAGCTCAAGAAGGTAGGCTCCCCGAATATGTAACATTTAAAAAGCGAGGCCCTTTGTCAAAGGAAATGTTGAAAGCCAAACTTTCCAAAGCAGTAAATGCCTGTTTAGGGAATGGAATGTCTCAGAATCATGCAGCAAATGTTTTTGATGTGCCAAAGAGCACATTGTGGAgacacttgcaaaaaaaaatttaccggACAAAAGATGGTACCAACGCTCTGTGTATTAAGGAGGAAATTGTTATTCCAGaaaattaa
- Protein Sequence
- MNHLKWMGHTATILDIQKALKNDPATCDITLTCRGKSVRANRFVLCSCSDLLRDILNDVPVGQEATIIVPDIKGSLLDSVLSFVYMGETSLSSTNLSDFLEAINVLGIKSAISFECASSFHSTNIKTVTEMAEMEEELMEAEPEQELVEKDDEEDQTGPEGGSVRELEFLEVYNEQEKISYTIENIAPNNPNEYILTESSGTFTLTPNAKIESSRDGNLVEKQEDDNQLMDHYVNDPIGDSSQCSSNEMKEIKPEKKLKDEFSGFQALSPVESKDGKVTANYQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKFNISKTVLWRRVKKHPLYMKTARENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPLSKEMLKAKLSKAVNACLGNGMSQNHAANVFDVPKSTLWRHLQKKIYRTKDGTNALCIKEEIVIPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00976669;
- 80% Identity
- iTF_00976669;