Mror006315.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757187.1:113365940-113375259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-05 0.0089 17.4 1.9 2 23 1377 1399 1376 1399 0.97 2 11 0.025 2.8 9.6 0.2 2 23 1420 1442 1419 1442 0.96 3 11 0.39 43 5.9 2.9 1 23 1458 1481 1458 1481 0.98 4 11 0.0014 0.15 13.6 2.2 1 23 1488 1511 1488 1511 0.97 5 11 0.0035 0.38 12.3 0.7 2 23 1618 1640 1618 1640 0.96 6 11 0.00027 0.029 15.8 3.2 2 23 1648 1670 1648 1670 0.96 7 11 8.6 9.3e+02 1.7 5.6 1 23 1690 1712 1690 1713 0.95 8 11 4.8e-05 0.0052 18.2 0.5 1 23 1719 1741 1719 1741 0.96 9 11 3.2e-06 0.00035 21.9 2.3 1 23 1747 1769 1747 1769 0.99 10 11 2.2e-07 2.4e-05 25.5 1.1 1 23 1775 1797 1775 1797 0.99 11 11 0.0012 0.13 13.8 0.5 2 19 1804 1821 1803 1823 0.95
Sequence Information
- Coding Sequence
- ATGTCGTCATTGTATCAGATTGAAAAGCTTGATGATGCGAACTACGATACTTGGTGTGTACAAATGCGCAGTGTGCTGATACATAGTGGCTGGTGGAAGATTGTTAATGGCAGTGTAAGGAAGGAATCTGCAACGGATGAAATAAGCAAAGCTTCTTGGGATGAAAACGATGAGCGTGCACTTGCATCTATAACGTTAAGCGTGAAACCAACCCAATTGGGGATGATAAAGAATTGCGTGACATCAAATGAGGCATGGATGCGGCTAGAAGAAACTTATAAGCCTAGAGGACCCATTCAAAAGGTATTTTTGTATAAACGTCTTCTAAATTTGACAATGGAAGAGGGTGGTAGTGTAAGCCATCATATGAATACGTTCACAGAATTGGCTGAAAAACTAAGGGAAACGGGAATTGTGATTCAGGATGAATTATTGGTCATCATGTTGCTCTCTAGTTTGCCAAACGAATTTGAACATTTTGTTATTGCCATAGAAATTCGGGATACTCTGCCGAGTTTATCAATTGTTAAACAGAAGATTCTAGAAGAAGGCAACCGTCACAAGGAAAAAAATGAGCATGAAGCATCCACAAATACACAACAAGCTTTTACGATGAAATTGTTTCAGAAGGAGCAAAACAGAACGCAAAAGAGCATTAAGCAGaacagaaacaaatttaaaggcaAATGCTACAACTGCGGGCAGGTAGGACATTTTGCAAGCAAATGTGAGAAGCCGAAGAAAAGACAGCAGCAGCTTTTGCAAGTAGTACAATCAACACACAATAATACGATGATGAATACGACATGGTGTGTCGATAGTGGTGCAACAGCACACATGTGTTGCGATGGACAAATGTTTGCcaattttcaacaacatagcGAAATCATTTCGTTGGCGGGTGACAAACAACTCGTTGCTATGGGGAAAGGCGATGTTGAAATTGATAATGGTAATGGTCTAcagataaaatttcaaaatgttcttttttcGTCGGAATtgcaaatgaattttatttctgttagtCGTGTTGTTGAAAAGGGCTTAGTTGTCAAGTTTGATTCAAAGTATGCAACTATACAACGTGATGATGGCACAGTGGTATTAAAGGCCAAAAAACAGGGCAACTTGTTTTTGACGAATTTTGGAACTGAAAAACTTTATGCTGCTGGTAATTCAGATAAAATGTGGCATAATAGGTTCGGCCACCTTAATTTTAAATCCCTGGGTCAGATGTCAACCGAAGGTATAAGTAGACAGCTTACGGTGCCCTACACACCGCAACAGAATGGCATAGCCGAGCGGGCAAATCGCACGTTGGTGGAAATGGCTCGTTCGATGATGGTTCACAGCAATGTTCAGCAAAATTTATGGGCTGAAGCGATAAACACAGCGGCTTATCTTCGTAATAGATGTCCTACTAAgatattggaaaataaaacaCCATATGAAATTTGGTTTCGTCGTAAGCCAAATGTACAGCATTTAAGAACATTTGGTTCACACGCAGTAGCCTTAAACAAGGCTGGTAGACGCAAATTTGAGGCTAAGGGCGAAGGTTTTATAATGGTGGGTTATTCCCAGGTGGCAAAGGCCTATCGTTTGTACAACAAGGACAAACAAAGCTTAGTCGAACGGCGTGATGTTCTATTTGAAGAAGATGCATATGATATCAACAATGGAGAACCTGCAACAAAGTGTGTCGAAGATTATCTTTCAATTGAAGTTCAAACTGATAATCGAAAATTGAACAGTGAAATACAGTCCGGAcctatagtttttaataaagtgcAAGACGAGACCGACAGTGAAAGTTCTGATGATATGAGTGCTGATAACATGAGTGATTTTGCTGGTTTTGAAACCGCTGACGATGCTGAATTAGATGTGGAACGTTGTATTGAAGATAAGCCTAATACTGTTAAGCGAGGCAAACCAAAGATAATAAGAACAAGTAGACCAGGCAGACCGCGAAAGCAGCAGTCAGAATTGCATAATATGATCGAGGAAGATGTGCCTACAACAGTACAAGAAGCAATGAATGGCGTAAATCGTGCTAATTGGTACGAAGCAATGTGTTCAGAAATGTCATCTTTGAGGAAAAATGGTACGTGGTCTTTAGTAGATTTACCAAAAGGCGCAAAGGCAATCAATTCCAAGTGGGtttacgctcttaagaaaaatgaaCTTGGTCAGGTGGAACGCTTTAAGGCTAGGCTTGTGGCAAAAGGCTGCAATCAAAAATTTGGCGTGGATTATGATGAGACCTTCTCACCCGTGGTCAGATATTCTACCATACGTTTGATGTTAGCATTAGCTGTGCAATGGAAAATGTATTTACACCAAATTGATGTCAGCTCAGCCTATTTGAATAGTGATATACACCACGACATTTATATACGTCAACCGGAAATGTTCATAAATCGTGAATATCCGGACATGGTCCTTAAGCTTCATAAGGCAATATACGGGTTAAAACAATCGGGAAAGGAATGGTATGAAAAGCTGTTTTCTGTTCTTAAGCGAATTGGATTTGTGCAGAGTGATAATGAACCTTGTTTATATAAAGCCTCAGTGAATGGAAAATTAGTATTGGTCGCAGTATATGTAGATGACATACTTATTGGTTGTGAGGATGAAGCAattgttttgcatattaaacaattattgGCGAAAAATTTTCCAATCACTGACAAAGGACAGCTACATCATTATCTGGGCATCGAAATACAACGTGAAGGTAACACAGGTACAATAACTATGTGTCAAACACAATATATTAAGGAGTTACTCAAAGAGTATGGCATGGAGAACTGTAAATTAGTTACGACTCCACTTGAAGCGAATCATCAGGTAATTTGTAATAAAGATGACTGCAAGATGGTTGACCAGCACGATTACCAGTCTGTAATAGGTGCGCTAATGTATCTGGCTATTACAACTAGACCAGACATCCTCCATTCGGTTTCGAAACTGGCACAACGGAATTCGAATCCGCATATCGAACATATGCAGGCAGTGAAGCGAATTTTACGTTACCTACGTGGAACAATCGATATGAAGATTGTATACGAAGCTGGAGACAAATCCATAGAGGGATTCGTAGACGCTGATTGGGGTGGTAACGCCCTCGATCGGAAATCTTATACCGGTTTCATATTTTATGTTGGTGGATGTCCCGTATCCTGGGAATCCAGAAAACAATCTTGTGTGGCTCTTTGTAGCACAGAGGCTGAATATATGGCAATGTCAGATGCTGCCAAAGAGGCTATATTTTTAAGACGATTGTTGATGGAAATTGGATATTCATCTGGTGAGGCTATTCAACTAAACATCGACAACCAAGGTGCGGAAAAACTTGCGATAAACCCCGTGTATCATAAGAGGACCAAGCACATAGACATTCGGTTTCATCATTATTCAACCGATGTTGAGCATCTTATGCCGcaatatttatgttatttatgtAGTCGTAAACTTAAAAGCTCTTGCAACTTTATAAACCAGGCCAAGTACTGCAATTCCAAACTTATGAAAATAATTTCCAGAAAATTGTATTGTTTGCAAGAAAGAACAATTGATTTGCCGTCTGTAAACGTAAACGATATTGAAACAGTCGcaagcaatttaaaaacagaaaagagTTTTTGCGATTTTAAGGACAACCCTAAAGAAGATGAACCAGCTACTGCAACAGATGATATAAACTTCAAATCCACGAATATTGTTATGAAAGCAGAAACATTTGAAGGCTTCCTGTATAatgaaaacacaaataaaaatgatcAATATGTCAACAACAAAAGCACAGTAGATGAACCAGCTACTAAACCAGATGATATAAACTCGAAGTCCACTAATGTTGTTATGAAAGCAGAAATATGTAAAGGTTTCATGTACAATGAAGAAAGCAATCAAAATGTTGATCCTCATGACATTGATAAAAACAAAGGCTTAGAACAAGGACTGGCTACTACAGCAGATGAAATTATTTCTGATGCCAAAAATgatcaaaactatttaaataatcaAACACTAAAGTGCTTCTCACTAATCAATCCTAATACATCTGCCTCAACAAAACCAATTGAAAATACCCCGAAGTCTTCAAAATCTAAAAACGATACGGTCTGTCCAATATGCTATAAATGTATGAGTAGACGTGATAACTTACTAACACATATGCGTACACTGCATGAAATGAATGCGCCTAGTGACTTTTTAAATAGCCTTAAATCTGAAAATAAGGACATTATTTCTTGTAAAATGTGTCCTGGCGAATATACAAATCAATACGCTTATATATACCATCTAAAAACTGAGCACAATATTGATCAGGAAAAGGACAAACAAAAACTaaggaataaaattttcaaatgtagCTCATGCGATTATACAGCAAAATCATACGGAGTTTTATGCATTCATACTCGCTCGAAGCATGGCACTGAGAAGGACAAATTCAATTGTCAATTTTGTTCCAAAAGTTATGTGTCTAAATTTGACCTGCTAACACATTTGAAGAAAATACACAAAGAGATGATTGCAACTCTAAAAGCTGATGCAGAACATAAAGCTGACCAGGGaaagGCTTTAAATGGTATTACTATAACACAACCTTACTTGCCTACAATTAAAATCTCAACACTGCCAAATGACAAAGAAAGTGAAGACTCCAGCGATGATGACACTCCTttggccaaaaaaattattaaatctcaAAAAAGATCTTTAAGCACTTACTTTGATAACGAAGATAAAGAACATTTAAGTGATGAAGAGTTTATCAGAAAGatgttaaatataaagaaaagaaagacCAGTTCATTGTCAACTAAATCTTTAGCCAGGCGTTGTGATGAGTGtggcaatatttataaaaactatggATCTCTATATGCTCATCAACGACACGTTCACAAAGGCAAAGACATATATAACACATGTTCACattgtggaaaaaaatataaacaaaaaatttctcttaGGCTTCATATCGAAAGGACTCACAAACCCAAAGATCCAAACAACAGCGTAAAACAACCGGCAAAAGTACGCGAGAAACGTTTTATGTGCACGCACTGTTCATACGTTTGTCAGACAATTACCATTTTAAATGTTCATATAAACCGTCATCATACTGGTGAAAAGCCTTACAAATGCGACATTTGCTCTAAATCATTTATTGTACCATACGATTTAAAAATTCATCGCTATCTACATACTGGCGAACGACCATACAAATGCCCAATTTGTTCTAAGGGCTTTCGAGATAACTCCCATATGGTTAAGCACAAACGTATACATAGCAGCGAACGGCCCTATAAGTGTACGGAGTGCGGAAAAGGTTTTACACAGTCCTACAATCTATCGGTGCATAAACGTGTTCatcttaaggaaaaaaaactaaattgtacAATTTGCGATAAAGTGTTTGAAAATAGATCGTTGTTAAATCTGCATTGTATAAATGAAAGTCACCACGATGAAGTtatatag
- Protein Sequence
- MSSLYQIEKLDDANYDTWCVQMRSVLIHSGWWKIVNGSVRKESATDEISKASWDENDERALASITLSVKPTQLGMIKNCVTSNEAWMRLEETYKPRGPIQKVFLYKRLLNLTMEEGGSVSHHMNTFTELAEKLRETGIVIQDELLVIMLLSSLPNEFEHFVIAIEIRDTLPSLSIVKQKILEEGNRHKEKNEHEASTNTQQAFTMKLFQKEQNRTQKSIKQNRNKFKGKCYNCGQVGHFASKCEKPKKRQQQLLQVVQSTHNNTMMNTTWCVDSGATAHMCCDGQMFANFQQHSEIISLAGDKQLVAMGKGDVEIDNGNGLQIKFQNVLFSSELQMNFISVSRVVEKGLVVKFDSKYATIQRDDGTVVLKAKKQGNLFLTNFGTEKLYAAGNSDKMWHNRFGHLNFKSLGQMSTEGISRQLTVPYTPQQNGIAERANRTLVEMARSMMVHSNVQQNLWAEAINTAAYLRNRCPTKILENKTPYEIWFRRKPNVQHLRTFGSHAVALNKAGRRKFEAKGEGFIMVGYSQVAKAYRLYNKDKQSLVERRDVLFEEDAYDINNGEPATKCVEDYLSIEVQTDNRKLNSEIQSGPIVFNKVQDETDSESSDDMSADNMSDFAGFETADDAELDVERCIEDKPNTVKRGKPKIIRTSRPGRPRKQQSELHNMIEEDVPTTVQEAMNGVNRANWYEAMCSEMSSLRKNGTWSLVDLPKGAKAINSKWVYALKKNELGQVERFKARLVAKGCNQKFGVDYDETFSPVVRYSTIRLMLALAVQWKMYLHQIDVSSAYLNSDIHHDIYIRQPEMFINREYPDMVLKLHKAIYGLKQSGKEWYEKLFSVLKRIGFVQSDNEPCLYKASVNGKLVLVAVYVDDILIGCEDEAIVLHIKQLLAKNFPITDKGQLHHYLGIEIQREGNTGTITMCQTQYIKELLKEYGMENCKLVTTPLEANHQVICNKDDCKMVDQHDYQSVIGALMYLAITTRPDILHSVSKLAQRNSNPHIEHMQAVKRILRYLRGTIDMKIVYEAGDKSIEGFVDADWGGNALDRKSYTGFIFYVGGCPVSWESRKQSCVALCSTEAEYMAMSDAAKEAIFLRRLLMEIGYSSGEAIQLNIDNQGAEKLAINPVYHKRTKHIDIRFHHYSTDVEHLMPQYLCYLCSRKLKSSCNFINQAKYCNSKLMKIISRKLYCLQERTIDLPSVNVNDIETVASNLKTEKSFCDFKDNPKEDEPATATDDINFKSTNIVMKAETFEGFLYNENTNKNDQYVNNKSTVDEPATKPDDINSKSTNVVMKAEICKGFMYNEESNQNVDPHDIDKNKGLEQGLATTADEIISDAKNDQNYLNNQTLKCFSLINPNTSASTKPIENTPKSSKSKNDTVCPICYKCMSRRDNLLTHMRTLHEMNAPSDFLNSLKSENKDIISCKMCPGEYTNQYAYIYHLKTEHNIDQEKDKQKLRNKIFKCSSCDYTAKSYGVLCIHTRSKHGTEKDKFNCQFCSKSYVSKFDLLTHLKKIHKEMIATLKADAEHKADQGKALNGITITQPYLPTIKISTLPNDKESEDSSDDDTPLAKKIIKSQKRSLSTYFDNEDKEHLSDEEFIRKMLNIKKRKTSSLSTKSLARRCDECGNIYKNYGSLYAHQRHVHKGKDIYNTCSHCGKKYKQKISLRLHIERTHKPKDPNNSVKQPAKVREKRFMCTHCSYVCQTITILNVHINRHHTGEKPYKCDICSKSFIVPYDLKIHRYLHTGERPYKCPICSKGFRDNSHMVKHKRIHSSERPYKCTECGKGFTQSYNLSVHKRVHLKEKKLNCTICDKVFENRSLLNLHCINESHHDEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -