Mror030174.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757191.1:72414447-72416298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 18 7.0 0.4 3 23 261 282 259 282 0.95 2 10 0.15 16 7.2 1.3 6 23 291 308 291 308 0.98 3 10 0.0021 0.23 13.0 3.9 1 23 314 336 314 336 0.96 4 10 2.9e-06 0.00032 22.0 0.1 2 23 344 365 343 365 0.97 5 10 0.00057 0.062 14.8 0.8 1 21 371 391 371 394 0.75 6 10 0.032 3.5 9.3 0.5 3 23 402 422 400 422 0.96 7 10 0.0021 0.23 13.0 0.2 2 23 430 452 429 452 0.95 8 10 0.00018 0.019 16.4 2.1 1 23 460 483 460 483 0.97 9 10 9.4e-07 0.0001 23.6 0.4 1 23 489 511 489 511 0.99 10 10 1.9e-05 0.0021 19.4 0.3 1 23 517 540 517 540 0.97
Sequence Information
- Coding Sequence
- ATGCTTTCTTGTCTTTTGTGTTTAGAGTTTTATAAAAGCCTCGAAGGAGGCGTATATGTTAATTCTGAAAAATGGAAACAGCAAAATATGAGTGATTTGATTAACAAACATTTGTGGCCAATGgaAAGACTGAACACATCATCTTGGATGTGTAAAGAATGTGGAGAGGAGTTGTATgactttcataaattttatgaaagaaTAGAAATTGCTCAGCAAAGACTTTTGAGCACAGAATTAAAAAGTGAAGACGGAACCACACTTGcagataaaaagtttttcttagaCAGCGATAACAGTCAAAATTTTGAAGATTATAAACATAATCTTTTTGATAAACATGATACTGAGCTACAGAGGCATTTGGAAAAGCCATTACCCACAGAATTTGTACTAGATGGAGCacatataaaaagtgaaaatgagaATCAAATTGACGAGGAAGTAACTGTGAAGCAACTGAGGAAGAGAGGAAGACCAACAAAGCAAGAGGTCCAAACAAATTATAACATTAAAGATGATCCTTTAAGGAAAGGATCAATAAAATGTAAACGATACAAAAtaacgaaaaagaaaaatatagataaaagcatatttttaccAGATAAGAAACAGCATATATTATTATTAGATCAAAATGACAGCAATACCTCGGATACCGATCCGGAACAGAAAGAAAATGGTGAAAAGGatcaagttaaaaagaaaaaccaccGTAACCTAGATGAGAAAGTACTTAGAGAGTATGACAGAATTATAGAGgaacattttaaaatcttttgcaaCATTTGCCAAATagaattgaaaaactttttagcatTGCGAAAACACTTTAAAGTAGACCACAAGCAACGTGGCTATGCCCGTTGttgtaaaagaaacttttttacacGCTCGCTCTTAGTAGATCATATACATGTACACTTAAATCCAGAGTACTTTAAGTGCCTTGAATGCGGTAAAATCTTTTCGGATCGTAGCCGTTTGCAGTGCCACAAAAAATTACATGATGATAATAGTAAACTGGATAAATGTGATATATGCGGCAAATTATTTGCAGACAAGGGTGCTCTGAAAAAGCATGTTTTGACACATTCATCGCAAAAATTGTACCCATGTTCAATTTGCGggaaatactTTACCAACTCAAATATATTAAACCATCACAAAGAAGCAGTTCACGAAAATAAGTTTGTTCAAATCTGTGAAATATGCGGCAAGTCAATTCGTTGTCCCACCGCTTTTGCCAGCCATATGGAAAAACACGAAGACAAGTCATCTCCCATTAGTTGTGATGTTTGTGGTCTTTTGTTATCTAATAAGGAAGGACTTAAGCGCCATAGGAATTCTCAACATCCAGAGGGTGGAAAAAAGGAGCATACATGTcatatttgcttaaaagtatCGCCCACACAAAGGGCTCTTAAATCTCATATACGTTCGGTACACGAGCAAGGATTCGATTACAAATGTAGTTTGTGCGAAAAGTCATTTAAGCGGCCAgcagttttaaaaGAACACATGGCAACACATACCGGTACGGCCTTATATACATGCCCTTGGTGTCCGCGGACATTTATTTCAAATGGAAATATGTATAATCACCGAAAAAATGCCCATCCAAAAGAATGGGAAATActaaatcgtcaaaaatatgcCGGAAATGTATAA
- Protein Sequence
- MLSCLLCLEFYKSLEGGVYVNSEKWKQQNMSDLINKHLWPMERLNTSSWMCKECGEELYDFHKFYERIEIAQQRLLSTELKSEDGTTLADKKFFLDSDNSQNFEDYKHNLFDKHDTELQRHLEKPLPTEFVLDGAHIKSENENQIDEEVTVKQLRKRGRPTKQEVQTNYNIKDDPLRKGSIKCKRYKITKKKNIDKSIFLPDKKQHILLLDQNDSNTSDTDPEQKENGEKDQVKKKNHRNLDEKVLREYDRIIEEHFKIFCNICQIELKNFLALRKHFKVDHKQRGYARCCKRNFFTRSLLVDHIHVHLNPEYFKCLECGKIFSDRSRLQCHKKLHDDNSKLDKCDICGKLFADKGALKKHVLTHSSQKLYPCSICGKYFTNSNILNHHKEAVHENKFVQICEICGKSIRCPTAFASHMEKHEDKSSPISCDVCGLLLSNKEGLKRHRNSQHPEGGKKEHTCHICLKVSPTQRALKSHIRSVHEQGFDYKCSLCEKSFKRPAVLKEHMATHTGTALYTCPWCPRTFISNGNMYNHRKNAHPKEWEILNRQKYAGNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -