Mror005615.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757187.1:99256636-99270356[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00085 0.092 14.2 0.5 1 23 365 388 365 388 0.96 2 12 1.3e-05 0.0015 19.9 1.0 1 23 393 416 393 416 0.95 3 12 6.4e-06 0.00069 20.9 3.7 1 23 421 443 421 443 0.97 4 12 0.067 7.3 8.3 5.1 2 23 450 471 449 471 0.95 5 12 0.0015 0.16 13.5 2.8 2 23 479 501 479 501 0.95 6 12 0.025 2.7 9.6 1.4 1 23 507 530 507 530 0.95 7 12 0.0048 0.52 11.9 0.8 2 23 541 563 540 563 0.94 8 12 5e-07 5.5e-05 24.4 0.7 1 23 591 613 591 613 0.98 9 12 6.7e-06 0.00072 20.9 2.3 1 23 620 642 620 642 0.96 10 12 0.00022 0.024 16.1 0.2 3 23 650 670 649 670 0.97 11 12 0.0099 1.1 10.9 1.3 1 23 677 699 677 699 0.98 12 12 0.00031 0.033 15.6 3.3 1 23 705 728 705 728 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTGCCGTACTTGTGCCAAATGTGATTTTGATAATGAAAGCCAATGGTTTGATTTGTTTAATGCCCCTCGTTGGCAAGTGGAAACGGAGCGCATACATTTCGAATTGAGTACATGGAAAATAAAGATTTCATGTAACGATGGTTTACCGCAAAAAATTTGCACcgattgtttttcaaaattttgcacagtcTCCTCGTTTCATCAGCAATGTTTGGAAGCACAGACGATattaagcaatatttttgataaaatcgaTACACAAAGTATACAAGATGAGGAAGTGTTCGAgggattttcaaataataagcCTGAAAATGATTTAACAAACACTGTAAAGACTGCAACAAACCCCACAAGAGCAGAAACGGTAATTGAACCAGTGACAACAGCAGCAAATGCAAAAGTGGtggaaactttaaatttaattgatgaCACATTGGAGGGAAAAGCAGAAAAGAGCACAATTAACAGCAgaagcaataacaacaatgAAAACATCACAAATTTATGTAAACCTTTTGATGTGGAAAATCCTAATAACAACACCGAGGTTTCATTTAGAACCGTTACAAAACTAACAAATACTGCCGTCTTAAAAAACGATAATAAAAACCAACATTTTAATCACATTCCagtagaagaaataaaaaattttaataatagcaTTAACAACAACCAAAACAATAATGAAGATAATAAAGATGAAGATAAAGACGATTCCATGAACAAccttattactttaaaaactaatgaaacAACACTACCAGAAGATACCAACGATTTATATGAAAATGATCTTATAGAAGAACTTATCGAAGAACTAGATATCATCGAAGAAATCACcgaagaaaatcaaaataatgaAGTGATCCTAGAGTTTAAGCGAAATGCTAAAAACGAAGTACATGGAAATATAACGGTATCCCTAAGCAATGATAACGACGATGATCATTTAGCTGATAATTTACGTATAACATTTGAATGTAAATACTGTTACAAATGGAAGAACAGTGtaacggaaaattttttaacccaaCAAGACCTACTGGCCCATATTACCGAACTGCATAGTTCAGAGCAGCCTTATAATTGTCCATATTGTAGGCAAACGTTTATGGACGCAGCTTCTAGAACCACCCATATGAAGGAGGAACACAGCCAAAAAGTATATGAGTGTGAGACGTGTGGCAAGAAATATGCTGATAAGTTTAATCTAAAAAATCATGCGGAAAAATATCACAGTGGCACCGATTTCGATTGTACACTGTGCGGTAAGAGTTTCTGTTCGAGTAAAAGCTTAAACTATCACATGAAATGGCACAATCCTAAGGAACAATTAAAGTGTAGCTATTGCGATCGTTTGTTTATCAATCAGCGGCATTTGAGGTGTCATGAAGAGACTCATACTGGGTTTCGCAGCCAGGAAGTTTGTtctttttgtggcaaaaacttttttcatttaaaaactctCAGATGGCACATTTATCGTCAACATGGCGGCGAAAAGCCTTACAAATGTGCCAGATGCACAGAAgtttttacatcATATTTTGAGAAGCGTTTACACATGCTCGAGTATCATTTGGACAATTTGACACTCATTGAAAAAACTGAGTGCATGCTGTGCCACAAGCGTTACGATAACGAAATGGAGCTGAAAGATCATATGTTAGAAGATCATAAGGAAAATAAGGGAGCCGTTAAGATAGCCAACAATAAAAGAGTCATAATGAATAAGAAACCAAAAAGCTTTACGGGAATATTTCAATGTGAAAAATGTGATAAAAGATTTAATATGAAATCAGCTTTGGAAAGACATATGGTTGTGCATTCCATAGAAGAAAGaccTCATGCTTGCCCTCAATGTCCTAAACGTTTTAAACGTTCACAGGATATGAAGTGGCATCTAAAGACACATTCCTCAGAGAAACCAAATATTTGTGATGTGTGTGGCAAaggatttgctttaaaatatgttttaactcAGCATCGTAGAAGTCATGAAGttttggaaaaaaactttacttgcaCCACATGCGGCCGTTCGTATTTATTCGAGAAGTCACTACGTTTGCACGAGCGTATACACAGTGGCAAAACCTATTACAAATGTGATTTGTGCAGTGAAAGCTTTGTAACACATATTAAATtcaaatGGCATATGAAAAAAATGCATGACGAAGAAGAAGTGGCTGCTACAAATTTtagttctaaaaataaaatcaaatcaaacatgGAGCTGCCCTtggataattttgttaattttgtaataacttaA
- Protein Sequence
- METCRTCAKCDFDNESQWFDLFNAPRWQVETERIHFELSTWKIKISCNDGLPQKICTDCFSKFCTVSSFHQQCLEAQTILSNIFDKIDTQSIQDEEVFEGFSNNKPENDLTNTVKTATNPTRAETVIEPVTTAANAKVVETLNLIDDTLEGKAEKSTINSRSNNNNENITNLCKPFDVENPNNNTEVSFRTVTKLTNTAVLKNDNKNQHFNHIPVEEIKNFNNSINNNQNNNEDNKDEDKDDSMNNLITLKTNETTLPEDTNDLYENDLIEELIEELDIIEEITEENQNNEVILEFKRNAKNEVHGNITVSLSNDNDDDHLADNLRITFECKYCYKWKNSVTENFLTQQDLLAHITELHSSEQPYNCPYCRQTFMDAASRTTHMKEEHSQKVYECETCGKKYADKFNLKNHAEKYHSGTDFDCTLCGKSFCSSKSLNYHMKWHNPKEQLKCSYCDRLFINQRHLRCHEETHTGFRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRLHMLEYHLDNLTLIEKTECMLCHKRYDNEMELKDHMLEDHKENKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMVVHSIEERPHACPQCPKRFKRSQDMKWHLKTHSSEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCTTCGRSYLFEKSLRLHERIHSGKTYYKCDLCSESFVTHIKFKWHMKKMHDEEEVAATNFSSKNKIKSNMELPLDNFVNFVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045511;
- 90% Identity
- -
- 80% Identity
- -