Mror022270.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:38334277-38336071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.006 0.65 11.6 0.3 2 23 273 295 272 295 0.94 2 10 2.4 2.6e+02 3.4 2.7 6 23 304 321 299 321 0.97 3 10 1.5e-05 0.0017 19.7 1.6 1 23 327 350 327 350 0.97 4 10 1e-06 0.00011 23.4 3.1 1 23 356 378 356 378 0.99 5 10 4.1e-05 0.0044 18.4 0.1 1 23 385 408 385 408 0.97 6 10 0.024 2.6 9.7 0.1 2 23 413 434 413 434 0.96 7 10 0.00044 0.048 15.2 0.1 1 23 442 465 442 465 0.91 8 10 0.0014 0.15 13.6 0.2 1 23 472 495 472 495 0.96 9 10 6.2e-05 0.0067 17.8 1.7 1 23 501 523 501 523 0.98 10 10 7.4e-05 0.008 17.6 6.7 1 23 529 552 529 552 0.98
Sequence Information
- Coding Sequence
- atgccTACAATCTCATATTGTTGTTTGTGTTGTAAATTATGTAGTGATTACAAATTTCTACAAAATGAAATGGGGGAATCTaatgaaatttatgaaattacagTCAAGTATTTTGATCCGATGttaataaatgACAATATCAGCACAAACTACTTTAAGGATAACAAAATACTTTGCCTGGAATGTTGGTTGCACATAAAAGATTTTTACGATTTTCAGCAAACAGTTATAAAAACACGATCTTTGCTGGAAAATGAGAGTGAAGTAAAACATTTGCCATTGGAGATTAAGCTTGAAGTTGAACAACAGGAAAACTTAATACTTATAAACGAGAATAACCACGGCCCACCCAACAGAGATGAGGAAGTAACACATATTTGTAATACAATAACAGAGGATGGCATACATGATGATAAAGACGCCTTAGATGATAATAATGATCATGAAAGTAGTGATGATGATGAGGATGATAAAAAGccattaattgaattaaaaaaagttgaacaaTCTATTACACCCAAGGCGACCATCGAAAACAACACCGAGCATAGGCATCAGAAACTTGAGACAGAAAATCAAAAGCCTCAAACTCGTAGGGGCCGTAAACCTAAACATAAAGATGTCTCTCAATTAGTCTCAAAATGCAATGAACGTAAAGGCAAGAAGACTGAAGACAGTTTAGACAAACTTCCAATtccaagaagaaaaagaaaacttaaagatCCAGAGAAACCGAAAAAAAATTCAGGCATAAATTCTGGTTTAGAAAAGAGCAGAGAATCTGATAAATTCATAGCAGAATGGAAACCATTACTAGAGTGTGATCTGTGTAATGAAACATTTTCAgtttttgatttgttaaaggGGCATTTTAAGGTTAAACATAGTGCCAGATGTTATATAAAATGTTGTGAACGTAAGTTTTATCGTCGTTGTGTTCTGGTTGACCATATTCGCCTTCATATTAACCCACAAACTCATAAATGCGATGTGTGTGGTAAGCCCAGTTCCAGTAAATATAATCTCAAACTACATAAAAAGATTGTGCATGAAGACACAGAACAATTTAAATGTGAGGTGTGTCATagaaaatttaaccaaaaaccaAATTTGGAACGACATTTATTAACACATGCAACAGGAAGTAAAGACTTTATATGTAAAGAATGTGGCAAGGGATACGTTCTGGAAGTGCAACTAAAATCACATATTAAAACTGTTCATAATGATAATCGTGTGTGTGATCAATGTGGTAAGACCCTTCACGGAATAGGAGCACTCAAAGCCCATTTAATGGAACATGCTGGCATTGAAAGGCCGAAGTATCCTTGTGAAGAATGCGGTGCTCAGTTAAGGTCTCGTGGCAATTTAAGACGTCATAAGGCAGCCTACCATAACGATGGTTCTactatgtatgtgtgtagtaTTTGTGGAAAAGTTGCTGCTAGTGAATATGGCCTACTGACTCACAAGAAACATGTCCATCAAGAGGAACGTAAGCATAAGTGTACGTATTGCGAGAAGGCATTTAAGCGTCCTAAAATTCTACGTGAACACATTGCCACACATACTGGACAGGCACTGTATCAGTGTCCTCACTGTCCACAGACATTTAAAGTTAGTTCAAATATGCATCATCATCGCAAGAAAGCTCACCCTGTTGAGTTTGAAGAGGGAAGAAAAAATCGTTTACAATTGCGTAAAGTTGATATAACACAAGTTACAAATCAAGttgtaatataa
- Protein Sequence
- MPTISYCCLCCKLCSDYKFLQNEMGESNEIYEITVKYFDPMLINDNISTNYFKDNKILCLECWLHIKDFYDFQQTVIKTRSLLENESEVKHLPLEIKLEVEQQENLILINENNHGPPNRDEEVTHICNTITEDGIHDDKDALDDNNDHESSDDDEDDKKPLIELKKVEQSITPKATIENNTEHRHQKLETENQKPQTRRGRKPKHKDVSQLVSKCNERKGKKTEDSLDKLPIPRRKRKLKDPEKPKKNSGINSGLEKSRESDKFIAEWKPLLECDLCNETFSVFDLLKGHFKVKHSARCYIKCCERKFYRRCVLVDHIRLHINPQTHKCDVCGKPSSSKYNLKLHKKIVHEDTEQFKCEVCHRKFNQKPNLERHLLTHATGSKDFICKECGKGYVLEVQLKSHIKTVHNDNRVCDQCGKTLHGIGALKAHLMEHAGIERPKYPCEECGAQLRSRGNLRRHKAAYHNDGSTMYVCSICGKVAASEYGLLTHKKHVHQEERKHKCTYCEKAFKRPKILREHIATHTGQALYQCPHCPQTFKVSSNMHHHRKKAHPVEFEEGRKNRLQLRKVDITQVTNQVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -