Mror008389.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757188.1:22251227-22255398[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0021 0.22 13.0 0.2 3 23 32 52 30 52 0.97 2 16 0.025 2.7 9.6 2.2 1 23 58 81 58 81 0.93 3 16 1.1 1.2e+02 4.4 0.1 3 23 86 108 85 108 0.84 4 16 0.0017 0.19 13.3 0.1 1 22 116 137 116 137 0.95 5 16 4.7e-06 0.00051 21.4 0.9 1 23 145 167 145 167 0.97 6 16 0.00013 0.014 16.9 3.6 1 23 173 195 173 195 0.98 7 16 0.00015 0.016 16.6 1.5 1 23 201 223 201 223 0.93 8 16 1.3 1.4e+02 4.3 0.9 2 21 230 249 229 250 0.91 9 16 0.67 73 5.1 1.0 2 23 676 698 675 698 0.94 10 16 0.8 87 4.9 0.5 1 10 722 731 722 744 0.76 11 16 0.36 39 6.0 2.2 1 23 752 776 752 776 0.93 12 16 0.14 15 7.3 0.3 2 21 816 835 815 836 0.91 13 16 0.00022 0.023 16.1 0.9 1 23 844 866 844 866 0.98 14 16 5.6e-06 0.00061 21.1 1.8 1 23 872 895 872 895 0.96 15 16 7e-05 0.0076 17.7 1.3 1 23 901 923 901 923 0.98 16 16 0.00045 0.049 15.1 1.1 1 21 929 949 929 950 0.95
Sequence Information
- Coding Sequence
- atGGCGGAAAATAGTGACGCAACTGCATTAGACGAGGCTGATGCTCAGGCCATGCTGGTAAAGCTGTCCACAGATGGTGTTCCAAAACTGTTTTGTCCCCTTTGCAACAAGGCACTTGTGTCCCTATCCGGTTATGTCaagcatattaaaaaacatgaaCCCCCTGGTGGTTTTTTGTGTCGCTATTGCGAAGCCCGTTTCTGTTCTGATGAAGAGCTGAAAAAACATCGAGAATCCGAGCATACTATTATCGCATGCCGTCTTTGCCAAAATGTTACTTTTGCGAATGAAGATGACTATCGGGTCCACATACGGGATGTCCATCAGGGTATTGATAGAGAGATATTTACGTGTGAAAAATGTGGAGCGGTTTATAAAACCATTGATCCGTATCGTCGTCATATGGAAACAGAATGTGGTCGAATCAAGCCTTACAAGTGTGATAAATGCCCAATGGCATTTGTAacgaaatataatttgaaacaaCATTTGGATAATCATTCGGgagaactaaaattttgttgcagTTATTGTGGGcgtaattttaagcaaaaaggcCGTTTGGTAGAGCACGAAAGGACGCATACTGGAGAAAAGCCTTACAAGTGTGAtGTCTGTGGCAAAAGTTTCTCTCATCGCGAAAGTATTGTTACGCATTCTTCCCTTCACACTGGCGTACGTCTGGTGGAATGTGTAGCATGTGGATCCCGGTTTTCATGTTATTCCAATTTACTAAAACACCGAAGAAATCGCCCTGATACCTGTGGGTTGCCAAAGTACGATCCGCCCCGGAATCGTGTCAGGAAGAATATAAAAAGAATTCCACCCACTTTAAATCCAACTTCCGAAATCAAAGTGGTTAATGTGAATAAAGTTATCAAACCCGGCGATcagaaaaaagctttaaaaaaggaATCTCACGATAAGGAAGTCGCTATccaacctttaaaaattaaacctaCAGCACGCAAACGTACGGGGGGATCAGCCACATCAAGTTTAGGCAAACGCAGTATACGAAAAAAGATAttctcttttaatattttagagaaaacaggcgatttgaaaacagaaaaatctgAAACAGATGATGATGGTGACGAGGATTACCTGCCTCGAAAGGCAAAAGAAAGAGTGACTAAGAAAACAACTGAAGACTTCGGTTTACTTACGTCAAAtgaaattgctgataaagcttTGCAAAATCCCATCGATTCCCAATGGTCCGATGATAGTGAAGATGAATATGTGCCAGACTTTGAACCGCCCAGTTCAGATTCGGAGTGTGAAGATGGTGCGAACATCCAAGATTTCAAAATACCAATGCCTGCTGTAGCTATTAAGCAAGAAAATGAAGATAATGATAACGAAGATGTTCCCGTCACTACAGAAATAGAACCCTTGGGAGATTTTGAATACACTCGTATAGATGCTTATAACGCTGATGTAAAGTGTGAAAATGAAGGAGAGAATCTTTTCGATGAAAAAGATCGAATACTCGAAAATTTATTACATGAAAATGACTACAGCCATGCAGTGGAAATGGAGGGAAAAGGAAGGCCACTTAAAccatcaaaaagaaaaaagacacGCAAGACAGCAGACTCCAAGACAACTCAAGatattgaagatattttaaaagagtCTGAAATGGCTTACATTAAATATGAAGACAGTGATGAAGTGGGGAATCCACAAGAGGatattttagaagaaaaatttaagGTACCCAACAAGGATGACATTACAGATTGTTATGTTTGGCTGGAGGATATAAGTGAACGTTTTCCAATTTTAAAGGAAACGTCCAGAGTAAAAGTGCCTCGAAATGTTCAATCCTTCTTTAAGCctcaaaaagttaagaaaatcagaaaaaaacgtGGAAAATATCGTCCAAGACGTATTAAAGGGGAAGCAACTTCTGATGATGAGGCTAAAGCCGGTAAAGCATATCGTAAGGCTCCTATAACTggcaaacaattaaaagaaagaatgaaattattaaacaaacgcGATAAATCTTGGAAATGCCCCCActgcattaaaatatattatatgcGCAAACCATATGAAAAACACCTCAGAGATGACCACAAACAATCCgaagaatttattaaagaaatattcaaaGATGATTTGGAGGAAGTTCAGACTGACGATGTATTCAAATGTCATTTATgtgataaaatatatttaatggaaAAGCGTTTACTGGCACACATACCTAAACATGGACCGGAAGGTAATTTACTACACAAATGTCCTTGCTATTGTTCTATGTATTTTGCCACACGCGAAGAAGCCACCGCTCATGCCCAAGAAAAGCACAAAGAATCTCTATGGTGtgaaatttgtgaaaaatatatGATGGGATGCGATACTTTAAAATCTCACAGAGCACGCATGCATGGCGGCCATAAAAATTATAGGAACAATCGCAGTTTGGTATGCATGAAGTGTGGCAAGAAGTTTTTGGGACGTACTCAACTAACTGATCACGAACGATCTGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAAGAGTGTGGCAAGTGTTTAACTACGGCTGGTATCCTTAAGACACACATGTTATTGCATAGCGACGCTAGACCGTATCAATGTGATAAATGTGGCAAGACATTTAAGATCAAGGCTCAATATAAAACCCATATCAGATTTGCCCATACAGATGAGAAGCGCTTCAAGTGTCACctTTGCCCCAAAGAGTATCCTTATCGTGAAAGCTTATTGACCCATATGTCCGTTCATACTGGTATTAAACGTTTTATGTGCAATGGCTGTGGAAAACGTTTTACTTGTGTGTCCAATTTACAAGCTCACCGCAAGGTTCAGGCTGAGACTTGCGGTCTTTTGCCTTTAAATGCCAAGGCCGTTCAGTATATGGGGGTTCAAAAGGGCAATTTACTAATGGGAGCCAAACCGGAGCCTGGTTTAGATTATGTTGAAACACAAACATTTGTAGCCAAAGATGTTATAACTCATGACTTACCCATGGCCATAGAGCATAATAATCAAGGCAGAAATACGCATGGAAATGACTCTTATAGTGATGGTGTGCCCCTAAGCATTGCCTCATCGGAATCTGATATTATATTCACgattaataaacattaa
- Protein Sequence
- MAENSDATALDEADAQAMLVKLSTDGVPKLFCPLCNKALVSLSGYVKHIKKHEPPGGFLCRYCEARFCSDEELKKHRESEHTIIACRLCQNVTFANEDDYRVHIRDVHQGIDREIFTCEKCGAVYKTIDPYRRHMETECGRIKPYKCDKCPMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKGRLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSLHTGVRLVECVACGSRFSCYSNLLKHRRNRPDTCGLPKYDPPRNRVRKNIKRIPPTLNPTSEIKVVNVNKVIKPGDQKKALKKESHDKEVAIQPLKIKPTARKRTGGSATSSLGKRSIRKKIFSFNILEKTGDLKTEKSETDDDGDEDYLPRKAKERVTKKTTEDFGLLTSNEIADKALQNPIDSQWSDDSEDEYVPDFEPPSSDSECEDGANIQDFKIPMPAVAIKQENEDNDNEDVPVTTEIEPLGDFEYTRIDAYNADVKCENEGENLFDEKDRILENLLHENDYSHAVEMEGKGRPLKPSKRKKTRKTADSKTTQDIEDILKESEMAYIKYEDSDEVGNPQEDILEEKFKVPNKDDITDCYVWLEDISERFPILKETSRVKVPRNVQSFFKPQKVKKIRKKRGKYRPRRIKGEATSDDEAKAGKAYRKAPITGKQLKERMKLLNKRDKSWKCPHCIKIYYMRKPYEKHLRDDHKQSEEFIKEIFKDDLEEVQTDDVFKCHLCDKIYLMEKRLLAHIPKHGPEGNLLHKCPCYCSMYFATREEATAHAQEKHKESLWCEICEKYMMGCDTLKSHRARMHGGHKNYRNNRSLVCMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHSDARPYQCDKCGKTFKIKAQYKTHIRFAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKAVQYMGVQKGNLLMGAKPEPGLDYVETQTFVAKDVITHDLPMAIEHNNQGRNTHGNDSYSDGVPLSIASSESDIIFTINKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -