Mror027183.2
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757191.1:23812763-23815664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.39 42 5.9 0.3 1 16 134 149 134 151 0.86 2 12 1.2 1.2e+02 4.4 3.2 1 20 230 249 230 251 0.89 3 12 2.2e-05 0.0023 19.3 0.9 1 23 277 299 277 299 0.98 4 12 6.5e-07 7e-05 24.1 0.7 2 23 318 339 317 339 0.97 5 12 0.00074 0.081 14.4 0.9 1 23 365 386 365 386 0.96 6 12 0.00044 0.048 15.2 0.5 1 23 392 414 392 414 0.98 7 12 0.0044 0.48 12.0 1.0 1 23 454 476 454 476 0.97 8 12 8.1e-08 8.8e-06 26.9 0.6 1 23 482 504 482 504 0.99 9 12 0.00014 0.016 16.7 2.7 1 23 510 532 510 532 0.98 10 12 5.1e-06 0.00055 21.2 0.6 1 23 538 560 538 560 0.98 11 12 7e-05 0.0076 17.7 2.5 1 23 564 586 564 586 0.98 12 12 0.004 0.43 12.1 0.1 2 23 599 621 599 621 0.95
Sequence Information
- Coding Sequence
- atgtcTGGTAAGTACAATAATAATATCAATGCTTATTccatatttgaaacaaaaaattttaaagaaaaagccaGCAATGAAATGAATAATTGGCTATTTTGCGCTGTAGATTTCGTAAAGGAAGAAAATGATACAACATATACAAATGATGGGGAAGTTCAAGAACCAGAATCAATTTCATTAGACTCTACGGATCTAGTGGTCAATGATAGCGAAGAACAATTTGAATATGAGTGTGATGAAGCAGACAATATCGGAAGGTATGAGGACTTACAAGATACTGCTGATGAAAACAGAGAACAGCTACAGGAGCAACAACGAGTGTCTGACGACGATTTATCGAATCATAATTTAGTTATAAGAGAAACTATCAATGAAAACGGTCAGCTAGTGGAAGATTACTCTTGTCAGGAGTGCAATTTGATTTTTAGTACCATTGaagattttttcaattatcATCCCAATTTGGAGTTGCATAATGAAAACACAGAACAAGAAAGGAAACAGCAGTGTCTAGAAAATGAGTCATCATCCCCTGAAGAAAAGTTATGGGATGTAGTAGAAAATTTAGACGGGACTTCCAATGATGATGACATAGAAGAAGAAATAGAAGCTAAACCAAACACTTCAGATgtcatatacaaaaataatgatCAAAGCAATAGCGTCGAATTGGAAAACGAACGTTATTTTTGCTACGATTGTCAGCAAGTTTTTTGTGATCTTACAACAGCTGAAAATCACGAATGTAgcaatcaattaataaattctagCGAACTTATAGAgTCCAAATCTACTTTACTAGTGGACAAAGAAGACCGCAATGTCTATATATGTAATTTGTGTGATAAAGACTTCACCTCTTTGCGATCTTTTATCAATCACCAGCGCTGGCATAAAAAATCCGACGACCTGTTGAGTCACACTAAAACACAAAATGATGTAACTATAGTCTGTGATGTTTGCAATACGGTGttctcttcaaaaaaaaatttaaaattgcacatgaaaatgcataaaaaacatGCAGTTAAAACAATACAAGAAGCTTTACCAGTTGGAGCTCAAAGTGAATACAACGAATTGAATAAGTTCTTTTGTGAAATTTGCAACAAAAGttttgatcaAAACCTGTTGGTGATACACAAAAATATGCATCAAAACCTAGAAGAATATAACTGTGGCAGGTGTAATAAGCAATTTGAAAACCTGCCAAGCTACGAAATACACATGCAAATGCATAGTGAAAGTTCAGcgattataaaaaatacagCATCGTCTAAAAAAACAGACCATTTCATGGATAATTCGGAAGAAGCCCCCTCTACCTCAGTGACTGCAGATGCTAGCAAACGTAAGCACCCCTGCCAATATTGCGGCAAAGAGTTTTTGAGACCTTATGAAAAAGTAAAACACGAACGTGTCCACACTGGCGAAAAACCCTACGAATGTGAAGTGTGCGGTAAGTCATTTAGGGTGTCTTATTCCTTAACCCTGCACTTAAGGACTCACACCGATATTCGTCCCTTTGTGTGTGCTACCTGTGATAAGCGTTTTAAGCAGAAATCCGTATACGTACATCATCTTAAAATACATGATGTAGAGCGTTCGTATAAATGTGATATTTGTAGTAAAAGCTTTCGTACATCGGTGCAGTTAATTGgccataaaaatatacatagtaAACCCTATTGTTGTACTGAATGTAATCGCCCTTTTGCCTCTCTCTACTCCGTGAAGCTGCATATGAAAACTCACAACAAAAGTCACAAggcaaacaaaaatcttaaaaatcgcTGTAGTATCTGTGGTGCCACGTATGCTCGAATATTTGCTTTACGTTTACATCTCAAAGAACAGCATGATCTTGATTTGCATTCCATACAACTGATAGCAGCAACTAGTTCAAAGGCTAACACAAAGTCTAAGAAAATTGGCGCAGAAACATCTATACTAATGAATGTCACCAGTGAGGCTACGAGTCCACAAACACATTTTATAAACACTGATGATGATGAAAAAAACCAGCAAGAAGCCGACGACGATGTGGACATAAATGATGCAAATGAGGAACTTTTTAATAATCAGATAGACCATGAGGAAAACATACAAAATTCCTATTTGGATGAAACTGAAGCGGCTACACAAACCATATTAAATGTGGAAgagattTCAATGGAACATTTCACGACCGAAGAAATTATCACCGATTGGATTTCCAAATAG
- Protein Sequence
- MSGKYNNNINAYSIFETKNFKEKASNEMNNWLFCAVDFVKEENDTTYTNDGEVQEPESISLDSTDLVVNDSEEQFEYECDEADNIGRYEDLQDTADENREQLQEQQRVSDDDLSNHNLVIRETINENGQLVEDYSCQECNLIFSTIEDFFNYHPNLELHNENTEQERKQQCLENESSSPEEKLWDVVENLDGTSNDDDIEEEIEAKPNTSDVIYKNNDQSNSVELENERYFCYDCQQVFCDLTTAENHECSNQLINSSELIESKSTLLVDKEDRNVYICNLCDKDFTSLRSFINHQRWHKKSDDLLSHTKTQNDVTIVCDVCNTVFSSKKNLKLHMKMHKKHAVKTIQEALPVGAQSEYNELNKFFCEICNKSFDQNLLVIHKNMHQNLEEYNCGRCNKQFENLPSYEIHMQMHSESSAIIKNTASSKKTDHFMDNSEEAPSTSVTADASKRKHPCQYCGKEFLRPYEKVKHERVHTGEKPYECEVCGKSFRVSYSLTLHLRTHTDIRPFVCATCDKRFKQKSVYVHHLKIHDVERSYKCDICSKSFRTSVQLIGHKNIHSKPYCCTECNRPFASLYSVKLHMKTHNKSHKANKNLKNRCSICGATYARIFALRLHLKEQHDLDLHSIQLIAATSSKANTKSKKIGAETSILMNVTSEATSPQTHFINTDDDEKNQQEADDDVDINDANEELFNNQIDHEENIQNSYLDETEAATQTILNVEEISMEHFTTEEIITDWISK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -