Mror000486.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melanophora roralis
Gene Symbol
su(Hw)
Assembly
GCA_963583895.1
Location
OY757187.1:4710678-4716307[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5e-05 0.0054 18.1 1.9 1 20 131 150 131 152 0.95
2 12 7.8e-05 0.0084 17.5 0.4 3 23 203 224 201 224 0.93
3 12 0.11 12 7.6 0.6 1 23 230 252 230 252 0.95
4 12 6.4e-06 0.0007 20.9 2.6 1 21 259 279 259 280 0.95
5 12 6.3e-06 0.00068 21.0 1.7 2 23 292 313 291 313 0.96
6 12 2.4e-06 0.00026 22.3 3.5 1 23 324 346 324 346 0.99
7 12 6.8e-05 0.0074 17.7 0.8 1 23 352 374 352 374 0.97
8 12 1.5e-05 0.0016 19.8 1.0 1 23 380 402 380 402 0.99
9 12 3.2e-06 0.00035 21.9 0.9 1 23 408 430 408 430 0.97
10 12 5e-06 0.00055 21.3 2.3 1 23 434 456 434 456 0.97
11 12 2.7e-06 0.0003 22.1 0.6 2 23 470 493 469 493 0.91
12 12 7.1 7.7e+02 1.9 0.1 3 23 508 529 506 529 0.91

Sequence Information

Coding Sequence
ATGAGTATAAAAGTGGAGAAATCAATCTCGCCGACGAAACGATCTACTTCGGGCATTAAAATTCTTAatgatgaaaaaatatcaccACCAAAAATTCCAACAACGATGTCGGCAGCAACATCGCCACCTAAACAAATGACATTATCTATCgctaaaccaaaaaaaacctTGAAACAAGAAAATATGGATCATTATGTGATGAAAACAGTTAAAGGGGGGAAAAATACTGAATTGGGCATAGAAGAATCCGAGACAATTGATTTTATATTGGCTGACAATAACGAAGATGATTCATTAAAAAAGAGTCAAGAAATTACGGAAGAACTGCATCTAAGTGAAGATGAAGATCGTGACTCAACAGTTCCTTTTACTGCACAGGAGATAATTGAGCATGTGTGTGGAAAATGCTTTAAGACGTTTAGACGATTATCGagtttaaaaaaacatattgactATTGCCGATTCGATAGTGGCTATCAAAATCGCAAAGAAGAAATGTTGAAAAACTTggataaaattgaaaaagatgCTGTCATAATGGAGAAAAAAGATGTCTGCTTCTGTTGTGGTGAAAGTTATGATACATTtcatTTGGGTCATATTAACTGTCTCGACTGCCCTAAATcatttaaaactcaaataagtTATGAACGTCATATATTTATAAACCACTCAGAGTTAGATAATTACCCCTGTTGCATTTGCAATGCCAAATTACGAAGTGCTAATCTATTGAAACTACACGAAGAACAACATCGCAATCGTGGCAAACCGTATGCATGCAAAATTTGCGGTAAAGATTTTACACGTTTCTACCATTTAAATCGTCATCAAAAATTTTCCTCTTGTTCGGCCAATGAAAACGATACCTTGCATTGCAAAGTCTGCGACAAAGCATTCTATCGTTTAGATAATTTGAGAGCCCATTTAAAACAGCATTTAGGCACTAATCCAAGTAAGAAAAATGAGTATCAGTGTCCGACatgtgaaaaatgtttttacagtTTGTCTACTTTAAAtaTACACACACGAACGCATACTGGCGAGAGGCCTTTTGACTGTGATTTATGTGAGAAAAAGTTTCCATCATTAGTGGCTTTAAAAAAGCATAGGCGTTATCATACCGGAGAAAAACCCTATACTTGTTCAGTATGTAAGCAATCATTTGCTGTTAAGGAAGTTTTAAATCGTCATATGAAACGTCACACTGGCGAAAGGCCTCATGTTTGTAGTGAATGTGGAAAAAGTTTCATTCAAGGCACTCAACTTCGTACTCACATCAAGGTCCACTTAAGACCTCATGAATGCAATCAATGCCCAGAGAAGTTTAAGACAGAAAGGcaACTAGAAAAACATATGAGAGAGCATATGGGGCCAAAGAGAAAGGGTCGCAccagtaataaaaacaaatgtcctATATGCAAGAAATCTTTTACAACAGAAACTGCTTTTAACAGACATATGCAGATAGGTGATCATGCTAcaCCCGCCCAAAAACGTAAATTGAAAAAACGTACCGATTGTGCTGTTTGCAAAGAAGATTTCGATAGTATACAAGGTCTTcaatttcatatattaaaagtaCATCAAGAAGATCCCGAAACGTTTATCAATGAAGATCCTTTTGAAACGGCCCCAAGTAATGATGACATTGATTCAGTGCTAATGCCGGCTCCTAAAGTTATCAAAATTGAAGATGCTCAAGGGCAACGCATAGAATTTGTCACAACGAACAGTGAGGGTGAAATTTTAAACACCAACATCATAagtcttaataaacaaaaagtcttGAGACCACACAAAATAGTAGAAAACTCAAATAAAGTACAAGTATTGGAGGAATATATAATCGATGATGTTCCATCTACTTCGGCAAACGCTGAGACAAAACAGACTATATTGTTGGCAAATGAAGCGTTTACTGTAATACCTCTGGAATCAGATGATTGCATAATTGAACCAATCACTTCAAAATCATTACCAGTTAGTGTAAGCAATTCTAACTGCAAAAAGGAACAACGTAAAAATTTGGCTGAAAGTTTGGCTGCTGCCATAGCGGATGACAATAGCATTAATGAGCTGGAAACTTTAAATGAGAAGGCAGAACTTTCTGAAGAGGACTTAAAATTGAAAGATAATGTTGGCAAACTATTGGATATGTTGGTGGATAGTGCAACACTTAAAAAGTTTGGTTGGCCAGATATATCCGAAGAATTAGCACTTTGTAAGGTTATTGATAATTGCGGTCATGACTTATCTAAAGGGCAATACAACTTTTCGGAATGGGATTACGCCAGTCGTATGCGTGAATatgttaaattactttttaccgTCGTCATACACAATGATTCAATTAAAGAATTACTTAATAACTATCCAATCGATGAAGTTATTGAATATGTTTTGGGCAATGATGATGACGAcgatgataatgatgatgatgacgagGATAAAGATGATCAAAAAGataaggaaaataataaaaatgagttAAAAGACATAAAAAGGGAAAATGACGATTAG
Protein Sequence
MSIKVEKSISPTKRSTSGIKILNDEKISPPKIPTTMSAATSPPKQMTLSIAKPKKTLKQENMDHYVMKTVKGGKNTELGIEESETIDFILADNNEDDSLKKSQEITEELHLSEDEDRDSTVPFTAQEIIEHVCGKCFKTFRRLSSLKKHIDYCRFDSGYQNRKEEMLKNLDKIEKDAVIMEKKDVCFCCGESYDTFHLGHINCLDCPKSFKTQISYERHIFINHSELDNYPCCICNAKLRSANLLKLHEEQHRNRGKPYACKICGKDFTRFYHLNRHQKFSSCSANENDTLHCKVCDKAFYRLDNLRAHLKQHLGTNPSKKNEYQCPTCEKCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGTQLRTHIKVHLRPHECNQCPEKFKTERQLEKHMREHMGPKRKGRTSNKNKCPICKKSFTTETAFNRHMQIGDHATPAQKRKLKKRTDCAVCKEDFDSIQGLQFHILKVHQEDPETFINEDPFETAPSNDDIDSVLMPAPKVIKIEDAQGQRIEFVTTNSEGEILNTNIISLNKQKVLRPHKIVENSNKVQVLEEYIIDDVPSTSANAETKQTILLANEAFTVIPLESDDCIIEPITSKSLPVSVSNSNCKKEQRKNLAESLAAAIADDNSINELETLNEKAELSEEDLKLKDNVGKLLDMLVDSATLKKFGWPDISEELALCKVIDNCGHDLSKGQYNFSEWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDDDDDNDDDDEDKDDQKDKENNKNELKDIKRENDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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