Mror025649.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:92919100-92923909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.5e-05 0.0049 18.3 0.9 1 23 176 198 176 198 0.97 2 14 0.00038 0.041 15.4 1.8 1 21 204 224 204 225 0.94 3 14 0.00085 0.092 14.3 1.7 2 23 316 338 315 338 0.95 4 14 0.00021 0.023 16.2 2.0 1 23 415 437 415 437 0.99 5 14 0.06 6.5 8.4 5.3 1 23 443 465 443 466 0.95 6 14 0.011 1.2 10.7 0.6 1 23 487 510 487 510 0.96 7 14 1e-05 0.0011 20.3 2.6 1 23 516 538 516 538 0.98 8 14 2e-06 0.00022 22.5 2.4 1 23 544 566 544 566 0.99 9 14 1.2e-07 1.3e-05 26.4 1.8 1 23 572 594 572 594 0.96 10 14 0.0077 0.83 11.2 4.1 1 23 600 622 600 622 0.97 11 14 0.00091 0.099 14.1 2.2 1 23 628 650 628 650 0.96 12 14 1.2e-06 0.00013 23.2 0.3 1 23 656 678 656 678 0.99 13 14 3e-07 3.2e-05 25.1 1.6 1 23 684 706 684 706 0.99 14 14 0.0081 0.87 11.2 0.1 1 19 712 730 712 731 0.97
Sequence Information
- Coding Sequence
- atgttaatattggAAATATATGGCCGGGTATGTCGAGTGTGTATGTGTAAAGCAAACAATTTGCATGATTTGAACGAGACAACAGAGGAGTGTCTCACTATGAATGAAATGTTGATCAAAACTGTCTCCGGCGTACAAGCCAACATCGAATTTCCAGTGCCTCAAGAGATTTGTGATTTATGTATGGATCATTTACAAATCTCGTATAAATTCCAAAAACTTTGTATGACCACAAACgaacaaatgcaaaaaatatgggAACAGTCACAAAAAGCGgaagtaaaaaaacaatcattAGAAGGCGAAGTAGATAATGAAGATGAGCCAGATCCCATAAAAGTTGAATGTGATATGACAGAAGCTGAAGAGCAAAAACTGGAAAATATGAATAGTTTAGAGGAATTTGAAAATATCGAAAATGGCCATAAATGGAAGAATGAGACTGATGACGAAATACTACAACGGGATATACTggATTGTCAAGACACATCTTTATTGCCAGCGACTGCTCCATCTGCCAGCCCCTTTGCGTGCCTAGAGTGCAAGGAAGTATTTGGAAAGCCTAATCAATTGAAACGCCATCGGCGTAAACATGAATCAACGCATCCTTTTAATTGTTACATGTGTACACAGCGTTTCAAAACCAAAGGTCTGTTGCAAAAACATTTGAAGAgctgtataaaagacaaaagaaaATCGTTCAATAAAAGTGACAGTGAGATATTTGACGATGACGAGGATGTACCTCTcagtgctttaaaaaaatccgaAACGGAAAATGAAAGcgATGTGTCAaaggaaaataacaaaaagaaacataaaccCGTAAAAACAGTTGATAAAAAAACTCCTTATTATTGCTCCAAGTGCAATAGTTATTTTAAGTATGGATAtcagcttacaaaacactgttGTAGTGATTCTAACAATAAAACGCACTCGAAAAAATGCGAATTATGTAAAAAGACTTTTATTACAGAGATAATGTTGCAAAAACATAAGATTAGTAAGCATAAGAACAAAACATCCTTAAACCAGACAAAGGAAAAAATTTCAGACaataaaaatgttgaatttCAAGCCGATGACAAGGTTGAAGAAGTGGATATGGATCAAGAAAAGGATAACGATGAAGATTGGAATGACACGAATCAGGGCGATTCTTCGGATGATAGTGGCTCAGATTATGCAGAAAAGGAAAAGCCTGTTTGTAAAAGCCAACCAGAGCCGTCAACGAATCAATATAAATGTAATGAATGTGATGCTTCTTTTAGATTTGAAAAGCAACGTGTGCGTCATATTAAAAAACACACAGAAGCTTATCGTTTTGTATGTGCTTTATGTTGGGATCGTTTTAAATATCCACATATGTTACATAAACATATGGAAAAACATCATCCAGAAGATAATCCTAATCCAAAAGTGGCAGagacaaaaccagaaaatatagAGAAGACTCACGTTTGTAGTTACTGTTCATCGGCCTACTCAAATGTTGGCGGCTTAGCACAGCATATGAGCAAGAAACATCCAGAGATTAAGCCCTTCAAATGTGACAAATGTGATAAGACTTTTGTTGTCGAGGAGCATTTGAAAATACACACTAATCGTCATATgggtattaaaaactttaaatgtgaTCTTTGTGATAAATcgttttcatttaaatttgctATGAAACagcatatgcgcatacatacaggagatttaaattatttgtgtacTCTGtgtggcaaaaaattttatagacccAGTAATTTACGCCAACACATGCAGCGTCATGGCGATGATAAGCCTTATACATGTCCTCACTGTCCCAAACGTTTTAAATGCCCCTCGGATCGTTACATACATTTGATGTCTCATCAAGAAGGTAAAAACCATGTGTGTCAAACTTGTGGTGCTCGATTTTCCCGGGTGGATACTTTACATCAGCATCAAATATTGCACACAGGTGAAAAACGCTATAAGTGTGATCAGTGTCCAATGGcGTTTCCTCGTTTAATGAACTTAAATCGTCATGTACGTACCCACACCGGTGAAAAGCCTTACAAATGTAAATACTGCGAAAAGGCTTATGCACAGagtaatgatttaaataaacatttacgtACTCATGTAGGCGAGAACACTTATATGTGTACTCAATGTCCGGCTGCTTATAAATATCAGGCTGATTTAAGAAATCACGAATGGGAACATTATCGTTTGCAAAAGGAAGCCGAACAAAAGTCAAAAGACGAAGAGGCAGCCTTAAAAATGAAAGAAGAACAACAGAAAACTGCTATGAAAGTGAATGcatag
- Protein Sequence
- MLILEIYGRVCRVCMCKANNLHDLNETTEECLTMNEMLIKTVSGVQANIEFPVPQEICDLCMDHLQISYKFQKLCMTTNEQMQKIWEQSQKAEVKKQSLEGEVDNEDEPDPIKVECDMTEAEEQKLENMNSLEEFENIENGHKWKNETDDEILQRDILDCQDTSLLPATAPSASPFACLECKEVFGKPNQLKRHRRKHESTHPFNCYMCTQRFKTKGLLQKHLKSCIKDKRKSFNKSDSEIFDDDEDVPLSALKKSETENESDVSKENNKKKHKPVKTVDKKTPYYCSKCNSYFKYGYQLTKHCCSDSNNKTHSKKCELCKKTFITEIMLQKHKISKHKNKTSLNQTKEKISDNKNVEFQADDKVEEVDMDQEKDNDEDWNDTNQGDSSDDSGSDYAEKEKPVCKSQPEPSTNQYKCNECDASFRFEKQRVRHIKKHTEAYRFVCALCWDRFKYPHMLHKHMEKHHPEDNPNPKVAETKPENIEKTHVCSYCSSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHVRTHTGEKPYKCKYCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKSKDEEAALKMKEEQQKTAMKVNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259363;
- 90% Identity
- -
- 80% Identity
- -