Mror025643.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:92885585-92889944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00079 0.085 14.4 0.1 1 23 172 194 172 194 0.96 2 15 0.0026 0.28 12.7 2.0 1 23 200 222 200 222 0.96 3 15 1.8e-06 0.0002 22.6 3.1 1 23 280 302 280 302 0.98 4 15 7.4e-05 0.008 17.6 0.1 1 19 401 419 401 420 0.97 5 15 0.003 0.33 12.5 1.6 1 23 429 451 429 451 0.97 6 15 8.1e-07 8.7e-05 23.8 0.7 1 23 465 487 465 487 0.99 7 15 0.16 17 7.1 0.1 1 23 492 515 492 515 0.94 8 15 0.00036 0.039 15.4 3.4 1 23 521 543 521 543 0.98 9 15 0.076 8.3 8.1 0.0 2 23 550 571 549 571 0.96 10 15 3.7e-05 0.004 18.5 1.6 1 23 577 599 577 599 0.95 11 15 0.79 85 4.9 2.3 1 19 605 623 605 627 0.90 12 15 0.0012 0.13 13.8 1.7 1 23 633 655 633 655 0.97 13 15 1.3e-06 0.00015 23.1 2.8 1 23 661 683 661 683 0.99 14 15 6e-05 0.0065 17.9 0.7 1 23 689 711 689 711 0.99 15 15 9.7e-05 0.011 17.2 0.6 1 23 717 739 717 739 0.96
Sequence Information
- Coding Sequence
- ATGAATCCAACCAAGACCTGTCTTACTTGCCTCTGTTCGCTAATCGAAGGACGGGAGTTAAATGAAATTATCTGCGAGAACCTTAAAATTACGGATATGCTACACAAAATTGTCCCCATTATTTTGGAATATCAGAAAGTGTCACTGCCTCAATGGATATGTGGTGAATGCTTAGAAAAACTTCTCATATCGTATGCATTCCAAAGGCAATGCATAGAAATAGTTGACAAGTTTTGGTCTGAACAACGAATTAAAGTTTTCGATCCAGCTTTATTAAAACAGAGCGCTGAAGATTTAAGGGAAATATCTGATCAATATAGTGATAGTGATGAGGAGTTTACAatggaaagtaaaaaaattcaatttgaagAAATAACAATTGGATGCATTGCAAAAATCGAACAGGATATAAGCACGCCCCCGGTTGTTGGTGAAAATGGCGATGTTGAAATATGCAATGCCTTGGAAAGTGAAGAAATTGGgACGAGGCATCTAACTCAGCGAAACGGGTACTTTCCTTGCCCTGAATGTGCTATGGAGTTCAGCAGCTCAAATAGCCTTAAACTGCATGCAGTTACACATGAGGGAAATCAATCGTATCTATGCAACACATGTAGCactaatttttcgacagagaattcttttaaaattcacacGTTAACACATACGACTGATAATGTTGCCGCTGAAAATGACAAAGTAAAGCGAAACGTTGGTACTGAGGAAAATGACCGTAAAGAAATCTTTGAGGGCGAACAGAGTAAACAAAAccttcaattaaataaaacaacgccaaaagaaataaaagaagaaatgtGTTCCATGAAATTACTAACGTTTAAATGCCCTGATTGCCCAAaaagttttgagaaaaaaaattcgcTTTCGCGTCACCATAAAGTACATacgaaaaatgctttaaatataaataaaagtaacagCGATAATCTTGAATTTCTAGAAAATAAGAAATCTGACGATAATGATCAAATCGAAAAGTTACCTAAAATAATTGTGAAGAAGGAATTTGAAGATATACAAACATCTGAAGAATCAATAGATAATGTTGGTGAAAATGACAAATCAAATGCCTATTTAGAAGAGGATCTTTCTGCAGCCAAAAGagttaaaagtaatgattttgtTGATACCAGTATAAGAGAAATAGAAAAGCCGCAAATCAGGAACAGACGTAAAAGTTTTCCTTGTGATTCATGCGGTAAAGTTTTTGATTCTCCCTCTGGCCTAAGGCGTCATAGTCCTCTTCATTCTTTGGCAAACCCGCACGAATGTGAAATCTGTCAATATCGTTATGCAACCATCAATCTTCTTAAAAGCCATCTATTCACACATAAAAACCAGAAGGATCTGAACTCTACACGCCCAGAAGGTTTTAAATGTCCTGACTGTCCGCGACGTTTCGAGAAACAACCCTCACTCTCAAGTCACATGAGAAGTCACAACGAAGCTAAATACccttgttttgtttgtaaacgCATTTTAGTGTCTGTGCGAGCCTTAACCGAACACATCACAAATACACATCCGGAAACCGAAAAGCACAAATGTGATCAGTgtgaaaaaacatttgttttgcgTGCCCATCTATTAGAACATTTAAACCGACACAAAGGAAACAAATATGTAGTGTGTGTTATATGTGAAAAAGAACTTTCTGGCCTCAGTATTTTAAAAGAGCACATGCGTATTCATAGTGGCGAAACCCCTTATCTATGCACCCAGTGTGGAAAAAGGTTTCGTAGTATAAGTACTTTAAATTCGCATACGGAACGTCAcgcaggtttaaaaaaataccaatgcCCAGAATGCCCAAGCCGCTTTAACTGTAAGTCTGATGTTAGTAAGCATTCATGGACACACTCGGATTCAAAGCCTCATGTCTGTGAAATATGTggttcttcttttaaaaaaccgTATATATTGcgaaaacataagcttacacATTCTGACACAAGGCCTTACAAATGTGATGAGTGCAACATGacatTTGTGGTACTTCATACCTTACGCCGCCATATGCGCACCCATACTGGTGAGAAACCCTACAAATGCAAATACTGTGAACGTGCTTATGCCGATGGTGGAGACCGAACAAAACACATGCGAACGCATGTGGGCAAAAATACTTATATATGTGATCAATGTCCCATGGCCTTTAAATATCAAGCGGaattaaaaaagcataaatCTCAACATTATAAAACGGCccaaaaactattgcaaaaaGCGCAAGAATTATCTGGAGAAACACAACAAACAGAAGTAGCCGAAAAGGAAGAGaaaccaaataaaacaaactaa
- Protein Sequence
- MNPTKTCLTCLCSLIEGRELNEIICENLKITDMLHKIVPIILEYQKVSLPQWICGECLEKLLISYAFQRQCIEIVDKFWSEQRIKVFDPALLKQSAEDLREISDQYSDSDEEFTMESKKIQFEEITIGCIAKIEQDISTPPVVGENGDVEICNALESEEIGTRHLTQRNGYFPCPECAMEFSSSNSLKLHAVTHEGNQSYLCNTCSTNFSTENSFKIHTLTHTTDNVAAENDKVKRNVGTEENDRKEIFEGEQSKQNLQLNKTTPKEIKEEMCSMKLLTFKCPDCPKSFEKKNSLSRHHKVHTKNALNINKSNSDNLEFLENKKSDDNDQIEKLPKIIVKKEFEDIQTSEESIDNVGENDKSNAYLEEDLSAAKRVKSNDFVDTSIREIEKPQIRNRRKSFPCDSCGKVFDSPSGLRRHSPLHSLANPHECEICQYRYATINLLKSHLFTHKNQKDLNSTRPEGFKCPDCPRRFEKQPSLSSHMRSHNEAKYPCFVCKRILVSVRALTEHITNTHPETEKHKCDQCEKTFVLRAHLLEHLNRHKGNKYVVCVICEKELSGLSILKEHMRIHSGETPYLCTQCGKRFRSISTLNSHTERHAGLKKYQCPECPSRFNCKSDVSKHSWTHSDSKPHVCEICGSSFKKPYILRKHKLTHSDTRPYKCDECNMTFVVLHTLRRHMRTHTGEKPYKCKYCERAYADGGDRTKHMRTHVGKNTYICDQCPMAFKYQAELKKHKSQHYKTAQKLLQKAQELSGETQQTEVAEKEEKPNKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975794;
- 90% Identity
- -
- 80% Identity
- -