Mror025082.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:82876785-82881709[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00071 0.076 14.5 1.3 1 23 169 192 169 192 0.90 2 19 2.2e-05 0.0024 19.2 4.5 1 23 195 217 195 217 0.98 3 19 0.00056 0.061 14.8 0.2 2 23 225 248 224 248 0.94 4 19 0.017 1.9 10.1 0.2 1 23 254 278 254 278 0.93 5 19 0.0052 0.56 11.8 0.3 2 23 283 304 283 304 0.97 6 19 8e-06 0.00086 20.6 0.1 1 23 310 332 310 332 0.98 7 19 9.9e-05 0.011 17.2 2.0 1 23 338 360 338 360 0.98 8 19 3.9e-05 0.0042 18.5 1.1 1 23 366 389 366 389 0.97 9 19 0.0003 0.033 15.7 3.5 1 23 432 455 432 455 0.97 10 19 0.0076 0.82 11.3 1.1 1 23 474 493 474 493 0.77 11 19 0.0035 0.38 12.3 0.8 1 23 499 522 499 522 0.96 12 19 0.36 39 6.0 0.9 1 21 702 722 702 725 0.88 13 19 1.7e-05 0.0019 19.6 10.4 1 23 728 750 728 750 0.98 14 19 0.0013 0.14 13.7 0.2 3 23 758 780 757 780 0.96 15 19 0.0038 0.42 12.2 1.2 1 23 786 810 786 810 0.93 16 19 0.0014 0.15 13.6 3.2 1 23 816 838 816 838 0.99 17 19 0.00041 0.045 15.2 0.2 1 23 844 866 844 866 0.96 18 19 0.0018 0.19 13.3 0.3 1 23 872 894 872 894 0.97 19 19 9.5e-06 0.001 20.4 2.9 1 23 900 923 900 923 0.98
Sequence Information
- Coding Sequence
- atgttaaaactattACCATCAATCAATCTAATCCAACAGCCCAAAGCAAAATGTGGCGAAATATTTTGTCATAATCGTACGGAATTTACTCTACACTGCTTATTTTGCAATGTCAAGTTTTTTGCTTTCGAAGAATTTCTTCTGCACATTCAGAATGTTCATTTtgaaaatgatattttaaaaacggaAGCCGTCACAGGCGTTTCTGAGACTCCAATAAAAAGGAACCTTTTAAATACAACTAACGGGGAGAAATGTAAAATGTACTCAAGCGAGTGCGGTGATGATTATAATGGGGAGGCTTCCAGTAATTTTGAGGAAGAGAGTTCCGATGATTCAGTTATAAAAGTGTTATCGGAAACAGTGGTAAGACCACTAAGGACACGTAGAAAACTGCCTAAGGATAAAGTTAAAAGCAAGAATAAGAATAAGCAAGGAGATGCTGATGAGGTAACAAATTTAAACTCTTCAGATAAATGGAAGAAAACACACAGAGGTCACGAGTTTCAGTGTCCAGAATGTAGTGAAGTATTTAGACGTATAAAACATTTAGACCAACATGTTTTTGAAAGACATAGCGGCTACAAATGCTCTATATGCGATAAACGTTATCGTCATCAATCCCTATATAAAACACACTTGGAGTCGCatacaattgaaaaacaaattttaccttGTCCCAAAACCACTTGCAATCGAACATTTGCCAATCAAGAAAAACTTGATCGACATCTCGAAGTGCATACATTGGAGCCTAGGTTTGTATGCGATTTTGAAAACTGTGGCAGGGCCTTTCCAACTCAGCTGCGCCTTAAGACACATGCAAGTgcccacaaaaagaaaaatgtatgcGATATTTGTGGTTATAGCTGTAAAGCATATGCAACACTGGTTATTCATAAGCGTGTACACACGGGAGAAAGACCTTTCCCCtgtaaaatatgcaataaaagttttatttcaaagGCAGCCATTAACGAACACATGGCTACCCATTCCAGTGAGCGACCATTTGTGTGTGAAATATGCCAGGCAGCATTTACCAATTTTAAAGCTCTTCATCGTCATCGGAAGACACATACCACGGAAAGAAACTATAAATGCAAGTTATGTGATAAAGCCTTTAAAACATATAATGGCTTGGATAATCATGTGAGAAATATGCATCGAGAGCCTAAGAATACAGATATTGATGAAGATTTGCAATACCCAGAAGATATAAACTCAACCAAAAACACCCAAATATATATATCTAAAAAGAAAAGACATAAGGGTaatttaataccaaaaaaatataaatgtagcGTATGCTACAAAGGCTTTAAACGGCTTACTGGTCTGGATAACCATATGAGACATTTTCATGGTGAAACTGACTCGAAGACcttagaaaaatatgaaaattcgGATAAAAAGAGATATCAGTGCAAtatatgcaataaaaaatttacctccCTAGCACGGCATAGCTTGACGCACAATGATGAGAAAAAGTTTGAATGCAAGCTATGCGAAACCACATTTAAGACTTATAACGGCTTAGTGGGTCACAGGCTTCGTATGCATGAAGATTCCAATATAACGACTGATAATAAGgatttaaAATCTAATTTCCTTGAAACGGAAACAATAACGGAGGAATGCGACGAATCAATGAAAACAGAGTTTGAGGAAATATTGGATAACGTAGAGGTATCTGAAGAAATCAAAGAAATAGGTTTCGAAGCAGTATCCGTGAAAGAGTTTAAAGAAATGGATAATGAAGTATCCATGGAGGAGTTTAAAGATATAACTGATAACGAAGAGGAGTTCCCGGAGGATCTTAAAGACATAACAGGTAACGTAGAAGTATCGACGGAAGAGGTGACAATTGAAGTTGCATATGACTATGGCATTGAAGAAGATAATGATGGCGGTTATATTTGCGCGGAAGACACGAGTGATGAAGAAGCTACAAAAAATGTTgatcaaaaagttaaaacaaggtCTCAAAAACAAAGTGGCGAAGGAAAAAGACAGGATAATAAGGTATCATGTCCActTCAAGAATTAAACAGTTCTAAAAGAAAGGATATCGAGCCAAAAGAAAAGGAACTTGATAATTTCTCTTGCCACGAATGCGAAGATGTATTtccaaataaaatacatatggaTCAACATGTTGTTGAACAGCATAATGGGCACAAGTGTTCAATGTGTGATAAGCGGTTCCGTCGAAGGCATCATCTAAAAAGGCACCTTCTTACTCATGGGGTAAGAAAAAAAGTCCTCTGTCCCATAATCAATTGCCGGCGCACTTTTGTCGATGAGCAAAACCTAAAGCAGCATCTAGAAATGCATTCAATGGATCGTTCTTATGTATGTGATTTTAAGGGTTGCGGAAAAGCTTTTCAAACAAAACGTCGTCTGAATAACCATAAATATGCACACATGAAAGTGAAAAATTATGTATGTGACACTTGTGGCTATAGTTGCCGAGCCTACGCCACATTGTGTATACATCAGCGCATGCACACTGGAGAAAAGCCTTTCGATTGTGACGTTTGCGAAAAGAGTTTTGTCTCGGTGACTGCATTGAATAACCACAAGATTTCACATTCAACTGAGCGGCCATATGTATGCGAGATTTGTCAGGCTACGTTTGCAAAACAGAGCATTTTACAACGACATACTTTCATACATtccgatataaaaaattttaaatgccattTGTGCGATAAGGCATTTAAACAACCACATGGCTTGGATGGCCATATGCGGCGTTTGCACAAAGAACCtaaatccaaaaaataa
- Protein Sequence
- MLKLLPSINLIQQPKAKCGEIFCHNRTEFTLHCLFCNVKFFAFEEFLLHIQNVHFENDILKTEAVTGVSETPIKRNLLNTTNGEKCKMYSSECGDDYNGEASSNFEEESSDDSVIKVLSETVVRPLRTRRKLPKDKVKSKNKNKQGDADEVTNLNSSDKWKKTHRGHEFQCPECSEVFRRIKHLDQHVFERHSGYKCSICDKRYRHQSLYKTHLESHTIEKQILPCPKTTCNRTFANQEKLDRHLEVHTLEPRFVCDFENCGRAFPTQLRLKTHASAHKKKNVCDICGYSCKAYATLVIHKRVHTGERPFPCKICNKSFISKAAINEHMATHSSERPFVCEICQAAFTNFKALHRHRKTHTTERNYKCKLCDKAFKTYNGLDNHVRNMHREPKNTDIDEDLQYPEDINSTKNTQIYISKKKRHKGNLIPKKYKCSVCYKGFKRLTGLDNHMRHFHGETDSKTLEKYENSDKKRYQCNICNKKFTSLARHSLTHNDEKKFECKLCETTFKTYNGLVGHRLRMHEDSNITTDNKDLKSNFLETETITEECDESMKTEFEEILDNVEVSEEIKEIGFEAVSVKEFKEMDNEVSMEEFKDITDNEEEFPEDLKDITGNVEVSTEEVTIEVAYDYGIEEDNDGGYICAEDTSDEEATKNVDQKVKTRSQKQSGEGKRQDNKVSCPLQELNSSKRKDIEPKEKELDNFSCHECEDVFPNKIHMDQHVVEQHNGHKCSMCDKRFRRRHHLKRHLLTHGVRKKVLCPIINCRRTFVDEQNLKQHLEMHSMDRSYVCDFKGCGKAFQTKRRLNNHKYAHMKVKNYVCDTCGYSCRAYATLCIHQRMHTGEKPFDCDVCEKSFVSVTALNNHKISHSTERPYVCEICQATFAKQSILQRHTFIHSDIKNFKCHLCDKAFKQPHGLDGHMRRLHKEPKSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -