Mror025430.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:89152897-89161821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 8.1 8.8e+02 1.7 1.0 3 23 34 55 32 55 0.91 2 29 0.0048 0.52 11.9 0.9 2 23 147 169 146 169 0.95 3 29 0.0062 0.68 11.5 1.2 1 22 175 196 175 198 0.90 4 29 2.6e-07 2.9e-05 25.3 2.4 1 23 201 223 201 223 0.98 5 29 4.1e-06 0.00044 21.6 0.3 1 23 229 253 229 253 0.97 6 29 0.0011 0.12 13.8 3.9 1 23 258 280 258 280 0.97 7 29 0.0021 0.23 13.0 5.0 1 23 427 449 427 449 0.98 8 29 1.1e-05 0.0012 20.1 1.0 1 23 454 476 454 476 0.97 9 29 0.00045 0.049 15.1 0.7 1 23 479 501 479 501 0.97 10 29 0.0012 0.13 13.8 1.0 1 23 507 531 507 531 0.97 11 29 0.027 3 9.5 1.9 1 23 537 559 537 559 0.97 12 29 0.016 1.8 10.2 0.4 1 19 565 583 565 585 0.93 13 29 0.00038 0.042 15.3 4.8 1 23 593 615 593 615 0.95 14 29 6.5e-06 0.0007 20.9 0.0 1 23 621 643 621 643 0.98 15 29 0.0001 0.011 17.1 2.2 1 23 790 812 790 812 0.99 16 29 0.0047 0.51 11.9 3.9 1 21 817 837 817 838 0.95 17 29 0.011 1.2 10.8 4.8 1 23 842 864 842 864 0.97 18 29 0.0044 0.48 12.0 0.6 1 23 870 894 870 894 0.95 19 29 7.3e-06 0.00079 20.8 0.6 1 23 900 922 900 922 0.98 20 29 0.00017 0.018 16.4 2.5 1 20 928 947 928 948 0.95 21 29 0.0017 0.18 13.3 5.2 1 23 956 978 956 978 0.94 22 29 1.4e-06 0.00015 23.0 0.0 1 23 984 1006 984 1006 0.98 23 29 0.005 0.54 11.8 7.5 1 23 1105 1127 1105 1127 0.97 24 29 4.2e-05 0.0046 18.3 1.9 2 23 1133 1154 1132 1154 0.98 25 29 0.00073 0.079 14.5 1.0 1 23 1157 1179 1157 1179 0.96 26 29 0.00038 0.042 15.3 0.3 1 23 1185 1209 1185 1209 0.96 27 29 0.0048 0.52 11.9 0.5 1 23 1215 1237 1215 1237 0.98 28 29 0.0011 0.12 13.9 5.4 1 23 1265 1287 1265 1287 0.96 29 29 2.9e-06 0.00031 22.0 0.3 1 23 1293 1315 1293 1315 0.99
Sequence Information
- Coding Sequence
- atgttaaaaaattgctttttaccTGTGAACTATATTGAACCCAGTTCGCAAACATGTGGAGAAATTGTTTGTGAAAACTTACAAGAATTTATAATCAATTGTAAagtgtgtaaaattaaaatatttgagtttGAAGAATTTATAAGACATTTTAGAAAAACCCACTTGGAAGAAGGTGACGGAAACAAATCTTATAAACTTTCGGATAATGTGCAGGACCAGGAAACCGAAGAAAATTACGAACGTATTATTAAGCTAGAAATTACTGAAGCAACGGTGGGttctaaaaaaatcaatgaagaTGAGGAGTTCATATGGGATATGAATATTGAGAAATCTAGTGATGACAACGATAATGTACTCAATTCAGAAGACGATCAGGCTCAAGAAGATGAAGATCAAAGTATAATAAGAAAGtcCCGAAAACCTAAGGAACTGTCCTGTAAGTTTTGTAACAAAAAGTATGCCGACTCTAGACGTTTACAATTACACGTAAAAATAGTTCATTTGCGcgaaaaaccttttaaatgcaCGTTGTGTGATCAGGCATTTGCGGAAGAACGCTCACTTAAAAATCATGTTGGTCATAAGCATACCGGCTATGAATGTCCGGAATGCCATAAAAACTTTACTTCTAATAGAAATCTTAAACGTCATCTGCtaatacatttagaaaaaaaggattttatttgTCCAGAAGAAAAATGTGGCAAGGCTTTTGCTACCAAGAACCAGTTAAAAGACCATCTGCGATACCATAATGGTGAAATGTTCATATGCGAAGAGTGCGGTTACAAATGCCGGCAACGGGAATCTTTAATTGTACATAAACGTCACCATACAGGGGAAAAACCTTTTGGGTattacaataatttaataaataatacgtGTGGAGAAATCGTTTGTCGAACTGAAACTTCCTTTACTATTATCTGTAAATTTTGCAGTCTAAAAGTTTTCGAGTTCAATGAATTTGTACGACATTTCCACAACGCACATTGGAATAGGAATAATCCTATCGATGCtcccaaaaacaaaattgtaagtgAAGGAAGTTTTTCTGTTTATAACAAAGATGAAGAAGTAATAAAAACCGAAGTGAatgataagaaaattttttatgaagaaTCTTTGAGCGATTACGACGTTAGCGTTTCAGACCAATGGGAACCGGAGAATGATGAAAAAAGCATTGAAGAAGCGGATTCAAGTGATATGGAGGAGACAATAGCTATTCTAAAAAAGaaattaaaaacaagcaacAAAGAAGAACGGCCATTTAAATGTTCGTTTTGTAAACGTTCTTTTATTAACAAATCCTGCTATGAAATTCACGTACAAAACCATGAAACTTTTCAGTTTAAATGCGATGAATGCAACAAGTCCTTCCCCAAAGAATCCCAGCTAATACAACACCGAGGAAAACATAATGGTTATCGCTGTCCTATCTgcgataaaatttttgaaaaaagtggtTCTCTGCGCTTTCATAAAGAAACAcacattaaaactaaaaactttgtaTGTGATAAAAAAGACTGTAGTAAAGCCTTTCCTACACAACGTAGATTAAATTTGCATAAACGTATACATTTGTTAgaagttaaatttgtttgtgaACTATGTGGTTCGCGCCAATGCAACAAAAAAGCTCTAACAGATCATTTACGGACACATACCGGGGAAAAACCATTTGCCTGTGCGTTATGTGCTCGATGTTTCACCTCAAAATCATTACTTGCTGAGCATAAGGCTTGTCATGAAACAGAACGCAAGCATGTCTGTGATGTATGCGGTAAAAGTTTTAATCGACCAAAAGCTTTGTATCATCATAAGCATTTACATTtgggtataaaaaagtttgtgtgTAAAATTTGTGGTACTGCTTATGCTCAGGCGGCAGGCCTATCTGCTCATATGCGTaagcataaagaaaaaaatttgtttactgtAACACAATCAGATTCAACGTATGAAAATCTGACTAATAAAACGTGTGGggaaataattttccaaaatgaaACATCTTTTActattgtttgtaaaatttgtaatattaaaaaattcgagTTTAATGAGTTTGTGCAACATTTTCTTGATGCACACTGGACTGGGACTTGCAACAAGTATGATCAGAAAGAAGAAGCATATAAACATAGTGATGTGGaagattttataaaagataaccaaatcaataaattaattGCTCCTGAGTCTGACCAGAATGATAATTCAGAAAAAGACGAATGGGCGCCGCAGGAGAAGCAGTATGATTGTTACATGTCTAATGAACAAGACACAAGTGACATGGAGGAAACTTTAGCTATATTGGAAAAGaaaaaatcgtCCAAAACGAAGCAACGGCATTATAAATGTAATTTGTGCAAGCTTACATTTGCTAGCAAATCTGGCTATAtgagtcatttaaaaaaacatgaaactgacaaatttaaatgtaaatcatGCAGTAAAGCCTTTGCCAACGAATCCCAACTTTTACAACATCATTGTAAACGGAAGGGTTATACCTGCCAGATCTgtaatatgaattttaaaacatacgAATGTTTGCGCTATCATAAGGAATCTCATATTAAAACGAAGAATTTTATTTGTGACTATAAAGATTGCGTTAAGGCCTTTGTAACCCAACGTCGATTAAATGCGCACAAACGTTTGCATTATTCAGTGGGTAAATTTGTGTGTGAAGTATGCGGCTTACGTCTACGTAATAAGGAATCTCTAAATACTCATATGCGAAAACATACCGGCGAAAAACCTTTTAGTTGCAATTTATGCAATCGATGTTTTAGTACAAAATCATTGTTAACTGAGCATAAAGCTTGCCATGAAACTGAACGAAAACATATCTGTGATGTGTGTGGCAAGCGATTTAATCGTCCTAAAGCCTTGTATCATCACAAACATTTGCATTtaggtataaaaaagtttgtgtgTAAAATTTGTGGCACTGCTTTTGCCCAAGCGGCGGGATTATCGGCTCATATGCGTAAGCACAAAAAGGATAATTATATAActgaaagaaaaacaattgaAGCATATAATCATCAGGTCAATATACAACATGATTTGGAACGTTACAAATCGGAAAACGTATTAAAAACTGATATATTTAAACACAGCGAACAGCAAAATGTTGGGCTAAAAAAGGATAGTGAACAAAGTGATGATTTTTGGTCTTGCGGGACAGATCAGGACAAAGTTGACAGTGATTCAGAAGAATTCACAAGCCCTTTTAACTATTATGTAAAAGaccacaaaaaattatttaaatctacAAAAGAACAACGTTTTGAATGTAAACATTGCAAACGTAAGTTTACTACAAAACTCTACCTAAAATATCATACACAACAGCATGAGAAAAATAATGTTCAATGTGATAAATGCAACAAATCTTTTATGGGAAAACGTTATCTTACCTTACACCAGCGAACTCATGCTGGATACACCTGTAAAATTTGCAACAGAgtatttgataaatatgaagCATTGCGATACCATAGCGAAAGCCACATAGAAACAAGAAACTTTATTTGTGATTATGAAGACTGTGGTAAAGCTTTTCCTAATAGTCGTCGGTTAAGTGCTCATAAACGAAATCATTTTGCTCAGCCCTCATTTGTTTGCGAGATATGTGGATCGAAGCAACGTAGCAAAGAATTTCTAACTGTTCACATTCGTACCCATACAGGAGAAAAGCCTTACGCTTGTAATAAATGTGAACATTTTCTACAAGATCATCAGGCCGTCCATGCTATAAAACGTACACATGTTTGCACAGTCTGTGGAAAAGCTTTTGCCAGCAGAAAATCCCTTTACCATCATCGCCATTTACATTCgggtgttaaaaaatatgtgtgtaaaatttgtaatactGCATATACACAGGCGGCTGGATTGTCTAAGCATATGCGTAAACATAAAgaggaagtttttttattagagGCGAAACATAAAGATGTTGTAAGTGAAAACAGTAGTACAGATTGctag
- Protein Sequence
- MLKNCFLPVNYIEPSSQTCGEIVCENLQEFIINCKVCKIKIFEFEEFIRHFRKTHLEEGDGNKSYKLSDNVQDQETEENYERIIKLEITEATVGSKKINEDEEFIWDMNIEKSSDDNDNVLNSEDDQAQEDEDQSIIRKSRKPKELSCKFCNKKYADSRRLQLHVKIVHLREKPFKCTLCDQAFAEERSLKNHVGHKHTGYECPECHKNFTSNRNLKRHLLIHLEKKDFICPEEKCGKAFATKNQLKDHLRYHNGEMFICEECGYKCRQRESLIVHKRHHTGEKPFGYYNNLINNTCGEIVCRTETSFTIICKFCSLKVFEFNEFVRHFHNAHWNRNNPIDAPKNKIVSEGSFSVYNKDEEVIKTEVNDKKIFYEESLSDYDVSVSDQWEPENDEKSIEEADSSDMEETIAILKKKLKTSNKEERPFKCSFCKRSFINKSCYEIHVQNHETFQFKCDECNKSFPKESQLIQHRGKHNGYRCPICDKIFEKSGSLRFHKETHIKTKNFVCDKKDCSKAFPTQRRLNLHKRIHLLEVKFVCELCGSRQCNKKALTDHLRTHTGEKPFACALCARCFTSKSLLAEHKACHETERKHVCDVCGKSFNRPKALYHHKHLHLGIKKFVCKICGTAYAQAAGLSAHMRKHKEKNLFTVTQSDSTYENLTNKTCGEIIFQNETSFTIVCKICNIKKFEFNEFVQHFLDAHWTGTCNKYDQKEEAYKHSDVEDFIKDNQINKLIAPESDQNDNSEKDEWAPQEKQYDCYMSNEQDTSDMEETLAILEKKKSSKTKQRHYKCNLCKLTFASKSGYMSHLKKHETDKFKCKSCSKAFANESQLLQHHCKRKGYTCQICNMNFKTYECLRYHKESHIKTKNFICDYKDCVKAFVTQRRLNAHKRLHYSVGKFVCEVCGLRLRNKESLNTHMRKHTGEKPFSCNLCNRCFSTKSLLTEHKACHETERKHICDVCGKRFNRPKALYHHKHLHLGIKKFVCKICGTAFAQAAGLSAHMRKHKKDNYITERKTIEAYNHQVNIQHDLERYKSENVLKTDIFKHSEQQNVGLKKDSEQSDDFWSCGTDQDKVDSDSEEFTSPFNYYVKDHKKLFKSTKEQRFECKHCKRKFTTKLYLKYHTQQHEKNNVQCDKCNKSFMGKRYLTLHQRTHAGYTCKICNRVFDKYEALRYHSESHIETRNFICDYEDCGKAFPNSRRLSAHKRNHFAQPSFVCEICGSKQRSKEFLTVHIRTHTGEKPYACNKCEHFLQDHQAVHAIKRTHVCTVCGKAFASRKSLYHHRHLHSGVKKYVCKICNTAYTQAAGLSKHMRKHKEEVFLLEAKHKDVVSENSSTDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -