Mqua058605.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439485.1:48594454-48596137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9 2.3e+03 1.4 2.6 2 23 162 184 161 184 0.89 2 10 0.048 13 8.6 0.1 6 23 193 210 193 210 0.98 3 10 0.00067 0.17 14.4 8.7 1 23 216 239 216 239 0.98 4 10 0.37 97 5.8 1.3 1 10 248 257 248 270 0.85 5 10 0.0055 1.4 11.6 3.3 1 19 283 301 283 301 0.94 6 10 5e-06 0.0013 21.1 1.7 3 23 314 334 313 334 0.96 7 10 0.019 5.1 9.8 0.0 2 23 342 364 341 364 0.90 8 10 0.00034 0.089 15.4 0.4 1 23 372 395 372 395 0.93 9 10 7.1e-05 0.019 17.5 2.2 1 23 401 423 401 423 0.98 10 10 3.6e-05 0.0094 18.4 7.0 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- atgttgtgtaGATTGTGTGTAAATGAATGTAGTGATTTTACtgatattttccaaaaaaacgaGCATGAAATTGATGTACCGTGTCTTATAAACTCCTATTTTAAATTCCATGTGTCACATGACGACGAACGATCGACAATAGTTTGTACATGCTGTTTGGACAATTTGCGTAATTTTAATCTATTCCGGCAGTCTATCGAAAACGCCCAAAATAAGTGGGAAATAATACTTGATCTTCAACTAAAACATGAAGAGAAAGATAATTTGAAACAAGAAACAGAATTTGATAATGATTCTTACTCAGAAGTTGTAGAAGATATCACCGATGAAACAGAAACAAATCTGTATCAAAATGACGATAAGAAAGAGCTTAtagaaaatacaaaatccgagccACTTAATAAAGAATCAAAGGATAAAAAGTCTGTCAAGTCTCAATTATCAGAAAAATTCGATCTTCTCATAGCAGAAAACTCGAATTTATGCTGTAATGAATGCAATGAGCCCATGGAAAGCTTTAAAGTATTAAAGAAACATTTCAAACAAACGCATGGAAAAACCGGTTTTATGATATGTTGCAAAAGAAAATTCTTCCGTGCTGCCGACTTAGCTGATCACATTAATTTGCATTTGAATCCAAACTATTTCAAGTGCAAGGAATGTGATAAATGCTTTTCAAGTCGATACAGCCTAGATTTCCATCAGAGAACCTGCCACGCCGAGGAAGACAAAGGGCTAGTCTTCAAGTGCAAACATTGTTCGAGGAAATTTTTAACTCAGATTGTGCGTGACAAACATGAAAAAGCTCATAATTCTAATGATTCGAAGGATACTGAAGAGAAGAAACATTTTTGCACGCATTGTGGAAAAAGctTTCCAAATGAACTCAAATTGAAATCTCATGATTTCAACGTCCACAAAATTGTATACAACCGAATGTGTCATGTTTGCGGGAAAACTTTTCGTGGTAATAAAGCACTTGAACGACATCAATTGCAACACTCGGGCATAAATCCAAAACTACAGTGTAATATCTGCGGAGCAGAACTATCCACAAAAGGTATTCTGAAGGCACACATGGTAGCACTACATCCAGAAGACTCAAACGCTACATTTAAGTGCAGTATATGTGGCAAAAATTCGCCCAGCCAAAGGGCTTTAAAATATCATGTTGACTATGTGCACAAATGTGAACCAAAGCACAAATGTAACCTTTGTGAtaaggctttcaaaaaaattcaagctTTAAAAgAACACATTACAAAACACACAGGAGATCGGTTGTATGAATGTCCACATTGCCCGAAAACTTTCAAAGTTCGGTCAAACATGCATCACCATCGGAAGATAAAACATCCCAAGGAATTCCAAGAAAATCGAGGCAAACGCATAAAgagcaaataa
- Protein Sequence
- MLCRLCVNECSDFTDIFQKNEHEIDVPCLINSYFKFHVSHDDERSTIVCTCCLDNLRNFNLFRQSIENAQNKWEIILDLQLKHEEKDNLKQETEFDNDSYSEVVEDITDETETNLYQNDDKKELIENTKSEPLNKESKDKKSVKSQLSEKFDLLIAENSNLCCNECNEPMESFKVLKKHFKQTHGKTGFMICCKRKFFRAADLADHINLHLNPNYFKCKECDKCFSSRYSLDFHQRTCHAEEDKGLVFKCKHCSRKFLTQIVRDKHEKAHNSNDSKDTEEKKHFCTHCGKSFPNELKLKSHDFNVHKIVYNRMCHVCGKTFRGNKALERHQLQHSGINPKLQCNICGAELSTKGILKAHMVALHPEDSNATFKCSICGKNSPSQRALKYHVDYVHKCEPKHKCNLCDKAFKKIQALKEHITKHTGDRLYECPHCPKTFKVRSNMHHHRKIKHPKEFQENRGKRIKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -