Mqua010270.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439483.1:156819993-156828463[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.84 2.2e+02 4.7 0.4 1 12 16 27 16 29 0.91 2 13 0.012 3.1 10.5 1.2 1 23 351 374 351 374 0.94 3 13 0.32 84 6.0 3.9 1 23 383 405 383 405 0.98 4 13 0.00017 0.044 16.3 4.2 1 23 412 434 412 434 0.98 5 13 4e-06 0.001 21.4 1.1 1 23 440 462 440 462 0.99 6 13 2.4e-05 0.0064 19.0 1.3 1 23 469 491 469 491 0.98 7 13 0.00015 0.039 16.5 0.4 1 23 497 519 497 519 0.96 8 13 9.8e-05 0.025 17.1 0.3 1 23 525 547 525 547 0.98 9 13 7.5e-05 0.019 17.4 0.8 1 23 553 576 553 576 0.95 10 13 6.7e-05 0.017 17.6 3.2 1 23 582 605 582 605 0.97 11 13 1.5e-06 0.00038 22.8 2.6 1 23 611 633 611 633 0.98 12 13 4.6e-05 0.012 18.1 0.4 1 23 639 661 639 661 0.96 13 13 0.0012 0.31 13.7 0.9 1 22 667 688 667 691 0.92
Sequence Information
- Coding Sequence
- ATGACTGAAATCATCGATCGAATAGCTCACTATACAACTGAATTCTTCAAATGTTACCTCTGTAATAAAATATTTGCTGATGGCGATGAGCCCTGGCATATGTTTGAAAAACGACtcattgaaaatgttcaaagtgATGCTCCTTTAGCAGCAATACTATCATCAGCTCTGGGCAAAGATTTGGATCAGAACAGTGTCCATTCGAAGttAATTTGCGATGAATGCAATATCATCCTGTTGGAATATGAGCAAATCGAAAAAAGATTCTATCAACTCCGAGTGAAGATTCTCAATGATTACAACCATACggccaaacaaaataatatcgaACCAATTTGGTTTGAATTTGGAGACATCGATGAAGGTGTCCAAATGATGCAATTACAACAGGGGGAAATCCTCCAACAAGATGAAACTCTTCAACATATTCAGCCTGGTGAAGAATTTGAACATGAAATAAAACCGGCAATTGTTGATGGGCTAATTGCTCACATTCCAATTTTGGAAAATCAAGAAATTGTCAATTTGGTGGTTGAAGATAAAGAGGAGCAATATGAAGAAACGCAGCGACAGACAGATGATGTTATACTTCAGGACTTAGATGCGGCGgaaacaattttaattgaaagtaCCGGGCAGGATTTGGAAAGTTCGGCGGCTGCAGCGGCGGCGGTGGAGGCGATGGGTTACGAGGAGAAGAGTTTACATGTAATTGGTGAAGAAATACCCTATGAGCAAATAATCGAGCAAACTTCCGTAATGAGCTATGATAATAGCAACGATGATGTTCATGATTCAGCAATGGATTACAATAGCAGCAATGATGACAGCCATACAATAATCCCAGATGATATACCAATTAGTATAAATCAACATAAACGCAACAATCGTTCAATTAAACGTGAACAACAACAATCCATAGATCAACAACTTACTTTGGAATTTGAATTTAACGGTGGGATGTATTTGTGTGCATTGTGCCCGGATCAATCTGAACACGAACCCATGCTATTTGCGAGTCATTTGAAAACTACTCACAACTTTAAATTCTATGTTTGCGATATTTGCTACAAGGGTTTCCACAAACGCAATGAAGTCAACGATCACATGGACGAATTTCATGCCAGTGGAGCTGAAGAAGGTGAATTCCATTGTGATAATTGTTTGCGGGTCTTTTTGAATTTGCGTCAGTTCCGAATTCACAAACGTATGCATTATGCTTCGACCAAGCAACATGAGTGTTCGGAGTGTCACAAGAAATACAGTTCGAAGAATTTGCTGGACGAGCACATGAACATGCATACGGGCAATCGTCCGTTTAAGTGTGAATCGTGTAGTAAGGATTTCGCCTCGAAATACACACTGCAGGCTCACATGAAAATTCATACAAAGCGACCGAGACCGTATAATTGTGATAAGTGCGATAAGTCGTTTTTGAATCAGCAGAATCTGGTGCAGCACATGAAACTACATTCGGGGCTGAAGACTTTTATCTGTGAGGTGTGTCAGAAGGCATTTGGAACGCAGCACAATTTGGATGTTCATAAGATCGTGCATTCGGGTAATAAACCGTTTATATGTCGAACATGTGGCAAGGGATTTGCTCGACGAGCCGAGATCAGGGATCACGAGAGAACGCACACTGGCGAGAGGCCGTTCAAGTGTGACTTATGCACATTGGCCTTTGCCCAAAGATCCAATTTAATGACGCACAAAAAAGCCACCCATTTAAATGACAAGAAGCACAAGTGCGACTTGTGTGACAGATCCTTTAAGCGACGAAGATTGCTTGAGTATCACACTCAGTCAGCCCACACTGGAGAACGGCCACACAAATGCGAGGTGTGTGGTGCCACATTTGTCTACCCCGAGCATTTCAAGAAGCACATGCGAATCCACAGTGGAGTGAAGCCATATGCTTGCGAAGTATGCGGGAAGATGTTCAACAGTCGCGACAATCGCAACGCCCATCGATTTATCCACAGCGAGAAGAAACCCTACGAGTGTCTGGAATGCGGAATGGGTTTCATGCGAAAGCCACTACTACTATCGCATATGAAACATACAAAACATGTGAATGATACGATAATTGTGAATCAACCGCAAATAAGCCACAAAGGAGTGCTGGAAGTGTACAAAGAGACGACCGACGATGACGAAGAGGAAGAAGACGAATTGGTTATggagaatcaacagcagcaggaGCTGGAGCTGGAGGAAGAAGAAGGCGGTGAGGAAGCCCGCTATGATGAAGTTGTGACGTCAGATACAATTCTAGTAGAAGATGGCGATGGACAGTATATTAAGGATGAAGATGGCGAAGTTAAATACTTGCAATTTGCTGAAATGGATAAAGATGGACAAGCTACATTTACATGGGTTGACATAGCCGAAGATAAAGAGgatgaaaattaa
- Protein Sequence
- MTEIIDRIAHYTTEFFKCYLCNKIFADGDEPWHMFEKRLIENVQSDAPLAAILSSALGKDLDQNSVHSKLICDECNIILLEYEQIEKRFYQLRVKILNDYNHTAKQNNIEPIWFEFGDIDEGVQMMQLQQGEILQQDETLQHIQPGEEFEHEIKPAIVDGLIAHIPILENQEIVNLVVEDKEEQYEETQRQTDDVILQDLDAAETILIESTGQDLESSAAAAAAVEAMGYEEKSLHVIGEEIPYEQIIEQTSVMSYDNSNDDVHDSAMDYNSSNDDSHTIIPDDIPISINQHKRNNRSIKREQQQSIDQQLTLEFEFNGGMYLCALCPDQSEHEPMLFASHLKTTHNFKFYVCDICYKGFHKRNEVNDHMDEFHASGAEEGEFHCDNCLRVFLNLRQFRIHKRMHYASTKQHECSECHKKYSSKNLLDEHMNMHTGNRPFKCESCSKDFASKYTLQAHMKIHTKRPRPYNCDKCDKSFLNQQNLVQHMKLHSGLKTFICEVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCTLAFAQRSNLMTHKKATHLNDKKHKCDLCDRSFKRRRLLEYHTQSAHTGERPHKCEVCGATFVYPEHFKKHMRIHSGVKPYACEVCGKMFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVLEVYKETTDDDEEEEDELVMENQQQQELELEEEEGGEEARYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFAEMDKDGQATFTWVDIAEDKEDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694891;
- 90% Identity
- -
- 80% Identity
- -