Mper015749.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376672.1:8339962-8357114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.055 4.2 8.5 1.2 1 23 210 233 210 233 0.96 2 14 0.012 0.91 10.5 0.2 1 23 325 348 325 348 0.91 3 14 0.00012 0.009 16.9 0.4 1 22 385 406 385 406 0.97 4 14 7.7 5.8e+02 1.7 0.5 1 12 730 741 730 749 0.76 5 14 0.26 20 6.3 3.5 1 23 762 784 762 784 0.96 6 14 0.0052 0.4 11.7 0.4 2 23 790 811 789 811 0.97 7 14 0.29 22 6.2 0.5 1 23 835 856 835 856 0.96 8 14 0.43 33 5.6 7.4 2 23 898 919 897 919 0.95 9 14 0.00078 0.059 14.3 0.3 2 23 935 956 934 956 0.96 10 14 5.1e-07 3.9e-05 24.3 2.7 1 23 962 984 962 984 0.99 11 14 0.00028 0.021 15.7 0.2 2 23 990 1011 989 1011 0.95 12 14 0.00043 0.032 15.1 0.7 3 23 1019 1040 1017 1040 0.95 13 14 7.4 5.6e+02 1.8 0.2 1 19 1047 1065 1047 1066 0.78 14 14 9.4e-05 0.0071 17.2 0.8 3 23 1079 1100 1078 1100 0.97
Sequence Information
- Coding Sequence
- ATGGCGGATACATCCAGGAAAAGGTCGAGAAAGTCGAAATTGGTGCCTCGAGAGTGCCCCGTAGACGAATATGATCTTGAATTGCAGGTTCCGTCAGCAAAACTAAAGAAAAGCACGAATCAGAAAAAAAATAAGGTAAAAAAAACGGTACCGCCTGCTTCAATACCGGAGTCAATCGCACCAAAACCGGACCCAGACGCTTCGAAACCTGAAGAAGTATGTGACACAAGTGTACTGAGAAAAATCAACGCATCAGCTAGAGAAAGCACTGACACAGACGAGACGTTACCTAGAAAATTCGAAATAAACATTGAAGTAGAATCCTGTGATGACCACGACGATTTCGGTCAAGAATCATTGTGTCCAATTGAAAATGCACTCGTGAAAAAAGATGTGAATCCAACACCCATATCTTTAACCTTAGAATTCATTCTTGATGCAGCTGACAATCTGAAAGCCTCAACCAACGTAGCTGATAAAATATTAAATTTATACGTTAGAAACACAATTGGTTATGAGGAAAGACTAAAACTGGTACAAAGCTCGCATGAGAATAAAATACAGGCGACTCTAGACGTATGGCGAACGTGGCAGTCGCGTAGCTTCCACAGAGAAGATCCATTGTTCTACAAATGCTACGTCTGTACAAGATCCTATTGGTATTTATCAGAATTTCGTAACCACTTGGCTATGAGCCACTCAGATGATGAAGGCCTATTAATATCTCTGGAGAAGTATGAGACGCATGAAGCGAATTTGATAGCTTACCACAAACGACTTGTAGTTATCCTAGACATATACACCCACGGGCTTTGCTACCGCTGCGGTAGAGATTATCCTGCTCATGAAATATCGGCAAGATTTCAAGAGAAATTTTACAAGCAAGCGGATTGTTCAAGATATTTTTCTTGCTGTACTGGCCTGAGAGACCATTACCCTTCGTGTAATATTTGTAATGTACAAGAGAAGCCGTTTAAATGTGATATCTGTAAATCAAGATTTGATAATAATGAGGAACTGGTAGGTCATCTGGTTTTGTCTCATTCAGTTCGGTCCGACATACCAATAATGAACAGTTATGCCTTCTGCAAGATTTGTTGCGAACGGTATGAGCATTTCCACAAATGTGTAGAAAAAGGTCTTGGTCCTAACTTTGTATGCCCACACTGCTTCATAAGCTTCTCAAATGCGTTGACATTAGAATCACACATGAAAACTGCCACAGAGCCTTACAAATGTGAAATCTGTGAGGAAGTGATCCTGTATAACTGTATGAAGTTTGACCATATGTTGGTGCACACTGATAATTATATGAAAGTCAAGAAATGTTCGATTTGCGACGGTCTAAACGTTTTTCTGAGTAACGAGGACGCAAAAGCTCATTGGACCATGAAACATAAGGTCATGGATTTGAGGCGACATATCTATTTTCCTAAAGTGATCGTACCATCGTCCTGCATATATCAAAGATTAGCAGAAATCGATTTGAAAGAACAAGAAGAATCTTTGATGGAAGCTCATGAATCGGTATCAGAAGAGGTGCAATCAGAGACAGAAGAGTCACAATGGGGCCCAGAAGATCTACAATCGGGGTCAGAAGAAGAAAATGTTTTACTAGAAGAGCAGGATTCGGACATGGACGAAAAAAAGTCTTTACTGGATATAGAAGAAGATTCTGTTTCAGCACATCTACAGAATTATTTACAAGAAAAGCTAGATTCAGCGAGTGAATTTACAACGGAGAATGTTGCAGTAAAAGAAGAGCCAGAAGAATTAGATAGCCCAAGACTTGTTATCAAAGAAGAGCCGTTAGAAGAAGTCGACAACCAAATGTTTGAACAAGAAAACCAAACGGACAACTTTGAAAACCAAACGGACAACTTTGAAAACCAAAAGGACAACTTTGAAAACAAAACGGACAACTTTGAAAACCAAATTACGGTCAAACAAGAAAACGTAGAAGAAGAAGAAGAAGAATTAGATGAATATGAAGGAGACATAATCAAACTAAACTTTGATATAGAAGACTTATTACTGAAACAAGAAACAGCTGAATTAGTAAACAATATTAAAAATGAAAACCAAGATTCAGACTTTGAAACGGAAGAATCATTTATACGGACAAAAGATTCTATGATTGAACCGAAAATCATTATCACAGGAGAGCATAGAAAGAACAAAAAACTGTACCGATGTACCACGTGTGGGTTTCAAGCTAAACACAGAGAATACAGAGAACATATAGAGTATGATTGTGGCAAGAACCCGGTTAAGCATCGAAGCTACAATTGTACAAAATGTGACACAAAATTCGGTTCAATGAAAAAATTCCTGAGTCATTTCGAAAAACATGGCTACCCTCGTATTTCTTGTCCAGAATGCTTGAAGCAGTTCAATAATTTTACGTATTTAGGTCAACACGTACAGACTCATGTTAAAAGTAATTTTGTTCGAATCAAAGTCATTACATATGCAGCTGACGATGACAAGGCTAGGCCAGATTATCAATGCAAGATATGCTCTGAAAAAGTTGATTCGATGGATTTCTTTGACCATTGGGAGACTCATATTAAGGCAGACCCATCCCAGCCAGTAAAGGTGATTTCTAAGCCAAAGAAACAGGATATTCACGGACAGTTGCATGAGACAATCATAAAGGACTGTATTGCTCATCTGCATAAGCAACCAAAAGAATGTAATCACTGTCATCGAATGTTCAAACGGATCAACGAATGCAAGCGACACATTATTGAACATTTACTGGTGGACGCTTACAACCAGAAACATATATATAAAGAACTTAGATGTCAGATCTGTGATACTGGGTTTCCTGCCTCGGATAAATACAAGCAACACATGCGCGATCACGCGTCCTTGCCTGTCTACAAATGTGAATTATGCGACCGGACTTTTAGTGATTCCAGTAACTTTACTAAACATAAAAAAGTGCATAATTTGAGAGTGATAGTTTGTGATCTGTGCGGAAAGAAATTCCAGTCGAAATTGTCTTTGGCGAAGCATATTGAGCAACATCAGAACTCCTCACCAATAATTTGCGATATTTGCAACAAAGTCTTCTACTTCGAAAATTCTTACCGCCGCCATGTTAGATATTTCCACGAGAAAACTGCTACAAGTTTCCGTTGCGTAATCTGTGGCGACCGTTTTGACAGTTTAAGATTTAAATGGGACCATATGTGGGAAGTACACAAAGAGAGGAAACAAAAGGCAGATTGTCCTATATGCCATCAGTCTTTCAGAAAATATTCTGATGTTCGAGCCCATGCCAGGACAATTCATTTGATGGAAATCTCAGTTTTGAGCGTCAAAAAGTCCACAGACTCACGATCAAAGAAACGTGACCTTGGTAAAGTGGATAGATATTTAAGTAATAACGTGGCAGGAATTACAGTTGGTCGGAAATCTGAAACTTTGGTTATCTACGACTCTGACTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECPVDEYDLELQVPSAKLKKSTNQKKNKVKKTVPPASIPESIAPKPDPDASKPEEVCDTSVLRKINASARESTDTDETLPRKFEINIEVESCDDHDDFGQESLCPIENALVKKDVNPTPISLTLEFILDAADNLKASTNVADKILNLYVRNTIGYEERLKLVQSSHENKIQATLDVWRTWQSRSFHREDPLFYKCYVCTRSYWYLSEFRNHLAMSHSDDEGLLISLEKYETHEANLIAYHKRLVVILDIYTHGLCYRCGRDYPAHEISARFQEKFYKQADCSRYFSCCTGLRDHYPSCNICNVQEKPFKCDICKSRFDNNEELVGHLVLSHSVRSDIPIMNSYAFCKICCERYEHFHKCVEKGLGPNFVCPHCFISFSNALTLESHMKTATEPYKCEICEEVILYNCMKFDHMLVHTDNYMKVKKCSICDGLNVFLSNEDAKAHWTMKHKVMDLRRHIYFPKVIVPSSCIYQRLAEIDLKEQEESLMEAHESVSEEVQSETEESQWGPEDLQSGSEEENVLLEEQDSDMDEKKSLLDIEEDSVSAHLQNYLQEKLDSASEFTTENVAVKEEPEELDSPRLVIKEEPLEEVDNQMFEQENQTDNFENQTDNFENQKDNFENKTDNFENQITVKQENVEEEEEELDEYEGDIIKLNFDIEDLLLKQETAELVNNIKNENQDSDFETEESFIRTKDSMIEPKIIITGEHRKNKKLYRCTTCGFQAKHREYREHIEYDCGKNPVKHRSYNCTKCDTKFGSMKKFLSHFEKHGYPRISCPECLKQFNNFTYLGQHVQTHVKSNFVRIKVITYAADDDKARPDYQCKICSEKVDSMDFFDHWETHIKADPSQPVKVISKPKKQDIHGQLHETIIKDCIAHLHKQPKECNHCHRMFKRINECKRHIIEHLLVDAYNQKHIYKELRCQICDTGFPASDKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLRVIVCDLCGKKFQSKLSLAKHIEQHQNSSPIICDICNKVFYFENSYRRHVRYFHEKTATSFRCVICGDRFDSLRFKWDHMWEVHKERKQKADCPICHQSFRKYSDVRAHARTIHLMEISVLSVKKSTDSRSKKRDLGKVDRYLSNNVAGITVGRKSETLVIYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -