Mper023255.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376673.1:12982305-12987985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 11 7.1 3.0 1 23 72 94 72 94 0.95 2 17 0.025 1.9 9.6 0.4 2 23 102 123 101 123 0.97 3 17 2.7 2.1e+02 3.1 1.6 1 15 129 143 129 157 0.87 4 17 2.7 2.1e+02 3.1 1.6 1 15 163 177 163 191 0.87 5 17 2.7 2.1e+02 3.1 1.6 1 15 197 211 197 225 0.87 6 17 2.7 2.1e+02 3.1 1.6 1 15 231 245 231 259 0.87 7 17 2.7 2.1e+02 3.1 1.6 1 15 265 279 265 293 0.87 8 17 2.7 2.1e+02 3.1 1.6 1 15 299 313 299 327 0.87 9 17 2.7 2.1e+02 3.1 1.6 1 15 333 347 333 361 0.87 10 17 2.7 2.1e+02 3.1 1.6 1 15 367 381 367 395 0.87 11 17 0.0051 0.39 11.7 1.8 1 23 401 423 401 423 0.96 12 17 0.00052 0.039 14.8 1.7 1 23 429 451 429 451 0.98 13 17 0.001 0.077 13.9 5.0 1 23 460 482 460 482 0.99 14 17 0.0034 0.26 12.3 2.1 2 23 528 549 528 549 0.97 15 17 0.0025 0.19 12.7 3.8 1 23 566 588 566 588 0.97 16 17 1e-06 7.8e-05 23.3 0.7 1 23 594 616 594 616 0.98 17 17 3.5e-07 2.7e-05 24.8 3.1 1 23 622 645 622 645 0.98
Sequence Information
- Coding Sequence
- ATGGCGGGGTCAAACACAGACACAGACGACGTGAAGGAGGAAGGAGAGGACGCCAAGCTGGATGTGGGCGTCGAGCGCGAACAGCCGCTCGAAGATGGCGCTAAGAAACCACCGAAGAAGAAGTCCAAAATGATGTCGAAGTCGAAGTCGAAGTCGAAGCCTGCGCTGAAGCCGGGCGACGAGAAGCCGCGCCGCAAGCATCAGAAGCGGCCGCACGCCTGCGAGTACTGCAACCAGAAGTTCCTTCACCTCAACATGCTGGAAGTCCACAAACAGTCGCACGCGGGCGAAGCCCTGGTGCTGCGCTGCCACTACTGTCTGCAAGACGCACCGGACCAGCGCGAACTGCAGGAGCACCAAGCGACCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGGTGAGTACATCCTCTATGACAGAGCACCAGGCGAGCCACACGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAACAGCTACAAGAAGCGGGAGACCATGATCTACCACCGCAAGCGCCACGCGCCGGACAAGGAGTTCGTGTGCGACATCTGCTCCAAGCGCTTCTCGGCGGCCTGCAAGCTCAGCAAGCACCTCGTGACGCACCGCAGCGACCGCTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCAACACGCAGTACCACGTGCACATGCATCTGCGCACGCACCAGAAGGAAGGCCTGATCCTTGAAGAGAATCGCAACGAGATCCTAGCAATGGTACTTCAGAACGCGCGCAAGATCCCCAAGCAAGCGTCCGCTCCGCTCGCTCTCAGCTCCGTGCCGCCCGACGAGCGGTCCCGCGTGTGCAACATATGCGGCGAGCTGTTCCACCACTTCTACTACCTGGAGGAGCACCTCAAGAGCCACGCCTCCACTATAGCCATCACCGACATGGATAAAGAGGACGAAAAGAAATACGTCTGCCAGATTTGTAACAAAGGCTTTAAACTACATTATTATTTAAAACTCCACAGTTTCACACACTCTAAGGAAAAACCATTCATTTGTCAGCAATGCGGAAAGGGATTTATTACAAAAGGTAAACTGAAAAGGCATTTGGAGACACACACTGGTCTGAAGAAATACCAGTGTCATATTTGTTACAAGTTCTTCACGAGACCAAGTTATCTCAGGATCCATGTTCGAACGATCCATGGAACTCAGGACTATAATTTTAGGTTCGATAAGGGGTATGGGGTGGGTGCTATGACTATGTCGGATGTCAGTCAGAACAGTATATGA
- Protein Sequence
- MAGSNTDTDDVKEEGEDAKLDVGVEREQPLEDGAKKPPKKKSKMMSKSKSKSKPALKPGDEKPRRKHQKRPHACEYCNQKFLHLNMLEVHKQSHAGEALVLRCHYCLQDAPDQRELQEHQATHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMVSTSSMTEHQASHTGAKPYLCTICGNSYKKRETMIYHRKRHAPDKEFVCDICSKRFSAACKLSKHLVTHRSDRFVLRYECPVCAHMFNTQYHVHMHLRTHQKEGLILEENRNEILAMVLQNARKIPKQASAPLALSSVPPDERSRVCNICGELFHHFYYLEEHLKSHASTIAITDMDKEDEKKYVCQICNKGFKLHYYLKLHSFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRFDKGYGVGAMTMSDVSQNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00974296;
- 90% Identity
- iTF_00974296;
- 80% Identity
- iTF_00974296;