Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376672.1:7193773-7206098[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.011 0.87 10.6 0.2 1 23 207 230 207 230 0.96

2 11 0.0046 0.35 11.9 2.8 1 23 237 259 237 259 0.98

3 11 0.039 2.9 9.0 1.6 1 23 263 286 263 286 0.96

4 11 5.3e-05 0.004 18.0 1.2 1 23 325 347 325 347 0.98

5 11 0.0045 0.34 11.9 1.3 3 22 359 378 358 382 0.89

6 11 9.3e-05 0.0071 17.2 0.4 1 23 423 445 423 445 0.98

7 11 0.014 1 10.4 0.5 2 22 454 474 453 478 0.90

8 11 2.3e-05 0.0018 19.1 0.4 1 23 486 509 486 509 0.91

9 11 0.0022 0.17 12.8 3.8 1 23 515 538 515 538 0.94

10 11 0.0025 0.19 12.7 3.3 3 23 547 568 545 568 0.91

11 11 0.015 1.1 10.3 3.3 1 23 574 597 574 597 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.011	0.87	10.6	0.2	1	23	207	230	207	230	0.96
2	11	0.0046	0.35	11.9	2.8	1	23	237	259	237	259	0.98
3	11	0.039	2.9	9.0	1.6	1	23	263	286	263	286	0.96
4	11	5.3e-05	0.004	18.0	1.2	1	23	325	347	325	347	0.98
5	11	0.0045	0.34	11.9	1.3	3	22	359	378	358	382	0.89
6	11	9.3e-05	0.0071	17.2	0.4	1	23	423	445	423	445	0.98
7	11	0.014	1	10.4	0.5	2	22	454	474	453	478	0.90
8	11	2.3e-05	0.0018	19.1	0.4	1	23	486	509	486	509	0.91
9	11	0.0022	0.17	12.8	3.8	1	23	515	538	515	538	0.94
10	11	0.0025	0.19	12.7	3.3	3	23	547	568	545	568	0.91
11	11	0.015	1.1	10.3	3.3	1	23	574	597	574	597	0.96

Sequence Information

Coding Sequence: ATGGATTCCGAAGATAATATCATTTGCTGTGGTTGCCTAAACTCTGGCCGGAAAATGATACTTCTAGTAGAATATTGTAAGAAGCAATCTTTTAGGCAACTTATAAGCGAAATATCTTTAACAGAAGGAGACAGTATACCGGTGTGGCTGTGCTGGGAATGTGACGCCCGTATGAATAGCTTCACCAAGTTTAAACAACAAGTTAAAGCCTCATACTCTTTGTTCTATGAATATATTAAACAGAACACAAACCTCACAAGGCTCCGACCTGCACCAAGACTGTCCACACACACGCTACACAACTTTTCTCTACAAAACAACGGCCAACAACAATCATTCCAGATAATAACAACAGAAAACAACGATCAACCGAACTCACCAGAAAACTTAGACGAAAATAATTGTACTATTGATACAAACTCGGACGATGAGAAATCAGTAAGAATTCGAATAAAAAAAAAGAAAAAAATTAACAGAATTTTGTTAAGTAGCATTAAAAAGAAGAAAAAGCGGAAGAGGAAAGAAGTACAGCTGTATAAAGAGATAGAGCTGAGTAAAGAAGAATTGGAAGAAGAGAGGAGACTGGCTATGTTGAAAGACGATTATGTCAATGCTATGTTTAGATGTCAAAGATGTATTTTGTCTTTCCCTAATGCGGAGGATTTGAAGGACCATGTTAATATCAAACATGAATTGAACTTACAAAACTTCAAATGCGAGGTATGTGAGTGTACATTCGCCTCAGAGGTATCATACAACTATCATACAAACAAACATACACGCCGGTATGAATGCAATTCATGCACAGAACGTTGTAACAGTAAGCGAGCTGTTATCAAACACTATGAAATGGTGCACTTTCATGGACCATCGATAGAAATTGATGTTCAAAATCATCATCAAAACGGTGGCACAACGCATGATGCAGACGGCACGGAGGATAATAATGGTATGAAGCAGTCTTCAGCGACGTTTTCGTGTGAGTTTTGCGACAAGAGCTTCAGATGGAAGGCTTCGCTAAGGAAACACGTTGAGACGCACCGCATAGAGACAGGGCAGAAACGCAAGCCTTATTGTGAGCCGTGCAGGTTATCGTTCACAAATACTTCGAATCTTCAGAAACATGTGAAAACCAGTTCTAAACATCAGATTCAATTGAAACTTAGGAAACTAACAGAATCTCTTCCCGAAGACTCTTCGAACCCGGAAAAACATCAACAGTTTATCGACCAGATCAAATGCTCAGTGAACACCGCTAAGGAAAAGTTCCCTTGTCCCCAGTGCGACAAGAAGTTTCAGTGGCGAGGCAATCTGTTGAGGCATCTTAATAGTCATGTGGCTAGAGCAAATGGCGAGTTAGTCTGTGAACCGTGCAACAGAACATTCTCTTCTATAGCAACGTATAAACAACATATGAAAATTAGCAGAAAACATGTCAGCGAGAATGATTTCAAGTACATGTGCAGTGACTGCGGGAAGCGCTTCGCCAACAAGACTCGCCTCAAGGACCACGTGGACTGGGAGCATCTCAAGAACTATGTCCACACGTGTTCTGTGTGTCAGAAGGTGTTCAAGAGCCACACGTCGCTGTACCTGCACAATCAAGTCGTGCACAAGAAGGACAACGCAGAGCATCTGTGCGACCACTGCGGGAAGCCTTTCCCGAATCAAGCCAAGCTCCGCTGCCACATGCTGGCTCTCCACAGTTCACAATCCGCCTACAAATGTAACACGTGCGGTGCTCGCTTTAGTTGGCTTTCCTGTCTATCAAGACACAACAAGAAACTGCATGCGAACCTAAACACTATCCCTAGTAGATAA
Protein Sequence: MDSEDNIICCGCLNSGRKMILLVEYCKKQSFRQLISEISLTEGDSIPVWLCWECDARMNSFTKFKQQVKASYSLFYEYIKQNTNLTRLRPAPRLSTHTLHNFSLQNNGQQQSFQIITTENNDQPNSPENLDENNCTIDTNSDDEKSVRIRIKKKKKINRILLSSIKKKKKRKRKEVQLYKEIELSKEELEEERRLAMLKDDYVNAMFRCQRCILSFPNAEDLKDHVNIKHELNLQNFKCEVCECTFASEVSYNYHTNKHTRRYECNSCTERCNSKRAVIKHYEMVHFHGPSIEIDVQNHHQNGGTTHDADGTEDNNGMKQSSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKLRKLTESLPEDSSNPEKHQQFIDQIKCSVNTAKEKFPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCSVCQKVFKSHTSLYLHNQVVHKKDNAEHLCDHCGKPFPNQAKLRCHMLALHSSQSAYKCNTCGARFSWLSCLSRHNKKLHANLNTIPSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906467;
90% Identity: iTF_00952144;
80% Identity: -