Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376671.1:2634512-2648282[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.45 34 5.6 2.5 1 23 402 424 402 424 0.95

2 9 2.1e-06 0.00016 22.4 0.9 1 23 471 494 471 494 0.97

3 9 5.6e-05 0.0042 17.9 0.3 2 23 500 521 500 521 0.97

4 9 4.6e-05 0.0035 18.2 4.4 1 23 529 551 529 551 0.97

5 9 1.1e-05 0.00082 20.1 1.8 1 23 556 578 556 578 0.96

6 9 2.6e-06 0.0002 22.1 1.4 1 23 587 609 587 609 0.99

7 9 2e-06 0.00015 22.4 0.4 1 23 615 638 615 638 0.96

8 9 0.12 9.3 7.4 0.8 1 14 644 657 644 667 0.79

9 9 4.4 3.4e+02 2.5 4.3 1 23 675 698 675 698 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.45	34	5.6	2.5	1	23	402	424	402	424	0.95
2	9	2.1e-06	0.00016	22.4	0.9	1	23	471	494	471	494	0.97
3	9	5.6e-05	0.0042	17.9	0.3	2	23	500	521	500	521	0.97
4	9	4.6e-05	0.0035	18.2	4.4	1	23	529	551	529	551	0.97
5	9	1.1e-05	0.00082	20.1	1.8	1	23	556	578	556	578	0.96
6	9	2.6e-06	0.0002	22.1	1.4	1	23	587	609	587	609	0.99
7	9	2e-06	0.00015	22.4	0.4	1	23	615	638	615	638	0.96
8	9	0.12	9.3	7.4	0.8	1	14	644	657	644	667	0.79
9	9	4.4	3.4e+02	2.5	4.3	1	23	675	698	675	698	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACAGGACCTTACGGTCCGAACGAGGCGCCCGTAAACATGGGAGCGCCTGTTAATATGACACCAATGAGTGGTCATATGAATATCGCTCATAGCATTAATAATTTGAGCAAAATAGCCCATCAAGGTGTCCCAGCACCTAACGGACACTATAACCTACCGGACTATGCACACTACAACCACCCTTCAATAGGAATGTCGCCGCAAATGGGTCAATTTCCCAACTATCAACAACTGGGTTTCCAACATTCTTATACGAACCAACATGCAAATAATATGAACGATTTACAATTCCCAAATGGTATGTTTCCTATGAATTTAAATATACAGAATGAGCATAACTCTAATATAATGAATTATGCTTATGATAAGAGAAAAATCGAGTCTGTGAGGCAAGAAAACTTTAAAGAACAAAACATGCTGAAAATACCTTTAAACATACCTCAGATACCAAATACGAACTATAACAAACAGATTACCGGCAATAACGACTATGTACATAATGATATATATCAAGAAACTCATCATAATCTAGATTTAAGCATGAAAACTCAAGAAAAATTACAAATTAATAGCGCAAGACGGAAAAACATTGAAAACACTGTAAAACTAATTGAAAATATTCTAATTCACTCATCTAACAAACCAAGAGAAGTACCACCAATGATTCCAATTGCACCAAAAACAACAAAAGTTGTCACACCATCAGATGCTGTTGAAAAAGTAACAAAAACATCAACAGAAATTCCAGTCTCAAATACGGACCCATTAGCACAATCTCCAACAGATTTGACGGTTGAAGAACCTCAAAACAACAATGATAAACCAAACCCAATGGAAAATGGCAGTAAGAACAAAAAAACAACGGAAAATGTAAGGAATTACAAAAGAAAACGGGAAAATGACAGAAGAAAACCGGAAGAGAATGATGAATCATCCGATGAAGAAGTAAAACCTATTGGAATAATGCAACATTTTATAAGGGAACAGGACCCTGAAGTGACTACAGATGATAGTATTGTTATAAAGGTTGAAAAAGCAAGCTGGGCCGACTCTGAATGCTATAATCCATTCTTGAAAGATTGTCATGGGTTTGAGAGGGGTGAACATACGAATTATAGGATTATTGAGGGTGACTGTAGTGTTGCTGAAGCTATTACTGCTTATACAAATGAAGTAAAATCAGAAGGAGTATTTGAATGTCCACATTGCGCTCTCCTCTTTAAACACCCAAAAAGATTTGTGATACACAATAAATGGCATACATTCGGCCTTACGAATATAAAACGGATGGAGATTGCAAAAGTAAGAGAACAAAAGAGGTTTGAGAGAAAAGAGGCAAAAATTATTGAGCGGATGAATTCTAAAGAGGTCACTGATGTTAAAGTGGAGGGAAAGGTGTTCCCGTGTAAGGATTGCGATAAGGTGTTCAGTGCTAAAGGCAGCTTGAAGAACCATAGGCAGAGATCACACCCGACCCGCATCAGAGAATGTAAAATCTGTCACAAAGTGATATCAAGTTGGACGGCACTCCGGGCTCACTTGGCGACTCACTCAGCGGACTCGGGGCTCGGTTATCAGTGTAGCAAGTGTCCCAAGAGGTTCAAGTACTCACACTCGCTAGCTAAGCACTCCGATACGCACTTGGAAAAAGTACACGCATGCACAAACTGCCCCAAGAAGTTCGGCTCGCAAGCTCTGCTGAAGATGCACATGAAAACACACGAGAGGGTACTGCGCGGAGCGACATACAGGTGTACTTACTGCGGCAAGGGCTTCTTCGAGTCTTATAGTTTACAGGTACATGAAAGGACACATCGCAACGAGAGACCTTACGCGTGTGATATTTGCAACACCAGCTTCGGAACTAATTCTAGTCTCAAACGACACGTTAAAGTGTCCCACAACACAGCGAAGCCTCATCAGTGTACAATATGCCGGCGCAACTTCTCGACGGAGTCCATCAGGGACCGACACGAGCTCAGGGTCCATGGGGACCCCGAGGACTTCAAGTTTCCTTGCAAACAGTGCTCTTGCAAATATTTAAAACTAAAAGATCTACAAAAACACGTCTACAAAATGCATCCCAAAGGAAAAAGGAAGAAAAAGGTGAAAGTAAGCGATTCGGAATAG
Protein Sequence: MLHNTGPYGPNEAPVNMGAPVNMTPMSGHMNIAHSINNLSKIAHQGVPAPNGHYNLPDYAHYNHPSIGMSPQMGQFPNYQQLGFQHSYTNQHANNMNDLQFPNGMFPMNLNIQNEHNSNIMNYAYDKRKIESVRQENFKEQNMLKIPLNIPQIPNTNYNKQITGNNDYVHNDIYQETHHNLDLSMKTQEKLQINSARRKNIENTVKLIENILIHSSNKPREVPPMIPIAPKTTKVVTPSDAVEKVTKTSTEIPVSNTDPLAQSPTDLTVEEPQNNNDKPNPMENGSKNKKTTENVRNYKRKRENDRRKPEENDESSDEEVKPIGIMQHFIREQDPEVTTDDSIVIKVEKASWADSECYNPFLKDCHGFERGEHTNYRIIEGDCSVAEAITAYTNEVKSEGVFECPHCALLFKHPKRFVIHNKWHTFGLTNIKRMEIAKVREQKRFERKEAKIIERMNSKEVTDVKVEGKVFPCKDCDKVFSAKGSLKNHRQRSHPTRIRECKICHKVISSWTALRAHLATHSADSGLGYQCSKCPKRFKYSHSLAKHSDTHLEKVHACTNCPKKFGSQALLKMHMKTHERVLRGATYRCTYCGKGFFESYSLQVHERTHRNERPYACDICNTSFGTNSSLKRHVKVSHNTAKPHQCTICRRNFSTESIRDRHELRVHGDPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKVKVSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071769;
90% Identity: -
80% Identity: -