Mper007645.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376647.1:7368418-7372674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.031 15.2 0.1 3 23 178 198 176 198 0.96 2 11 0.023 1.7 9.7 0.2 2 23 203 224 203 224 0.97 3 11 0.008 0.6 11.1 8.7 2 23 231 253 230 253 0.96 4 11 0.0013 0.1 13.6 0.9 3 23 263 284 261 284 0.94 5 11 0.00017 0.013 16.3 3.9 1 23 289 311 289 311 0.98 6 11 0.0011 0.086 13.8 3.3 1 23 317 340 317 340 0.96 7 11 0.65 49 5.1 5.4 2 23 346 367 345 367 0.95 8 11 0.0093 0.7 10.9 0.6 3 23 372 392 370 392 0.97 9 11 0.0004 0.031 15.2 0.2 1 23 398 420 398 420 0.98 10 11 6.4e-05 0.0048 17.7 0.3 2 23 427 448 426 448 0.98 11 11 1.1e-06 8.1e-05 23.3 1.5 1 23 454 476 454 476 0.98
Sequence Information
- Coding Sequence
- ATGAACATGGAGATGTGTAGAGTATGTTTATCAACAGAAAAAGAAATACTTCCACTGGGTGAAACTTTCATTAACAACTATAATTTGTTAACAAATCTTAATATTACACTACTAGATGGTATGCCACAGTATTCATGTCAGACATGTATGGACACAGTCAAATGTTTCATAGATTTCAGGGAAAAGTCTATAACAGCAGAAACTACATTGAGAGAAATTATTTACTCTGAAATTAAAGCTGAAAATAAGACACTTGTTATAGAAATTGATAAGGGCTCTACAATTTATAAAAATGATAAGCTGGACATTAAGTCAGAGATAAAGGAAGAAAGCTATTATGAAGATGCATCTATTTTAGACAGCAACTTTCATGAAGTCTTTTCGGAGTATGAAGACAATGACAACATTATTCTCAAAAAAGAAGAAGATGTAAAACCAAAAAAGGTAAATAAAAATAAACTTAAGAAGCTCAAAGTAAAGACATCTAAGTTATTAGAAAGCATTGCTAATGAACTTGAAGACAAATGGTTTTGTGGTATTTGCCCTTTGACATTTGAAGACAAAATAGACCTGAATAATCATCTAGACAGCCATAATAAGGACCGACAATGTGATCTTTGTAGAGAGCAACTAAACAGCCTATCCCAGCTCCTTGCCCATAGACTGATACATGTCCCATTGAGACAAAGTAAATGTCACATTTGTGAGAAGAAATTTAAATCTTGTCTGTATTTGGAACATCACTACAGGAATTTCCACATTGATGAAGATGACAGAAATCTTTTTTGCAGTGACTGTCCTTGGACTTGTAATACACCTAAAAAACTTAGCAGTCATATTTTGCAAGTCCATTCCAGTATTAAGTACTTTTGCGACATTTGTTCTAAAGGCTACCACAGCAAAACGAATCTAAAATCACATTTAAAGTCACATGGTAAGAATAAAGCTTATGTTTGTGATATGTGTGGATTCTCCTGCAAACATAGTGGTGGACTGAAAGACCATAAAATAAGAAGACATAATCCAGCGAGAGTTTACTGTAAAAAGTGCAAGAGGCCATTTCCTAGTCAAGAGGACCATGATAAACATAAATGTACACACAAGTTACAAATATGCCCTATTTGTGGTCTTCAACTCAATGGGAACCATAGATTATCGCAGCACATGATGAAACACAGCGACATTCCAAAGTACGAGTGTACGAGATGCCCCGCTAAGTACAAGTCGCGGGGCGCGCTCATGGCTCACCTCGACCGACACGACGGGCTCCGGACCAAGCAGTGTGAATACTGCCCCGCCAAGTTCTACACTGCTAGTGTGCTCATCAAACATCGGCGGATACATACAGGTGAAAAACCATATGTCTGCAGGGTATGTAACAAAGGGTTTACAGGCAACCACAACCTCAAAGTACATATGAAAGTACACGGGGAATATTTGATTGTTAAAAAGAACAGCGAACAAGAAGATATATCTAAATTTAATGTTACCAAGTGGAGGTAG
- Protein Sequence
- MNMEMCRVCLSTEKEILPLGETFINNYNLLTNLNITLLDGMPQYSCQTCMDTVKCFIDFREKSITAETTLREIIYSEIKAENKTLVIEIDKGSTIYKNDKLDIKSEIKEESYYEDASILDSNFHEVFSEYEDNDNIILKKEEDVKPKKVNKNKLKKLKVKTSKLLESIANELEDKWFCGICPLTFEDKIDLNNHLDSHNKDRQCDLCREQLNSLSQLLAHRLIHVPLRQSKCHICEKKFKSCLYLEHHYRNFHIDEDDRNLFCSDCPWTCNTPKKLSSHILQVHSSIKYFCDICSKGYHSKTNLKSHLKSHGKNKAYVCDMCGFSCKHSGGLKDHKIRRHNPARVYCKKCKRPFPSQEDHDKHKCTHKLQICPICGLQLNGNHRLSQHMMKHSDIPKYECTRCPAKYKSRGALMAHLDRHDGLRTKQCEYCPAKFYTASVLIKHRRIHTGEKPYVCRVCNKGFTGNHNLKVHMKVHGEYLIVKKNSEQEDISKFNVTKWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852122;
- 90% Identity
- iTF_00851202; iTF_00300571;
- 80% Identity
- -