Basic Information

Insect: Melanchra persicariae
Gene Symbol: Clamp
Assembly: GCA_947386135.1
Location: OX376646.1:7681525-7688534[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3e-05 0.0023 18.7 0.7 1 23 123 145 123 145 0.99

2 7 7.4e-05 0.0056 17.5 1.6 1 23 331 353 331 353 0.97

3 7 2.2e-05 0.0017 19.2 0.1 1 23 359 381 359 381 0.98

4 7 2.3e-06 0.00018 22.2 3.0 1 23 387 409 387 409 0.99

5 7 1.9e-06 0.00014 22.5 0.4 1 23 415 437 415 437 0.98

6 7 4.7e-06 0.00036 21.3 0.7 1 23 443 465 443 465 0.98

7 7 8.7e-05 0.0066 17.3 0.2 1 23 471 493 471 493 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3e-05	0.0023	18.7	0.7	1	23	123	145	123	145	0.99
2	7	7.4e-05	0.0056	17.5	1.6	1	23	331	353	331	353	0.97
3	7	2.2e-05	0.0017	19.2	0.1	1	23	359	381	359	381	0.98
4	7	2.3e-06	0.00018	22.2	3.0	1	23	387	409	387	409	0.99
5	7	1.9e-06	0.00014	22.5	0.4	1	23	415	437	415	437	0.98
6	7	4.7e-06	0.00036	21.3	0.7	1	23	443	465	443	465	0.98
7	7	8.7e-05	0.0066	17.3	0.2	1	23	471	493	471	493	0.96

Sequence Information

Coding Sequence: ATGTTCACTACGAACACCGTTCAAACCGGCACAGTGCCGACGCTGCAATATCAAGAGCATCCACAAAAGTCTCAAGGCAAAAACATTGAAAACGTTCAGCAAAAGAATGCTCAGCAGAATCAACAACAACAACAACAGGAGTTTCCTACATTTTGTTATACTACCAACGTGAATATGATTGGTAAACTAGGCACAGGTGCCAGCAGTGGAGCTGGCAATGTCACCAGTGGTGTCAACATAACACAACTGACAACTAGCGACGATAAGACTTGTTACATAGCCCAACCGTTTTCCTACAACTATGCATTAGTGAATCAAATGCAAATAGCTCCAAATGGAATTCAGAATACAATATCAAATATTAGTTTCAAATGTGATGTTTGCGGTCTAATGTTTGGGCATCTTACTCTTCTGAATGCTCATAAAAGAATACATGCTCAGGATACAGAAAACAATATCACAGTGGTAGCGACAGGTGTAAGTACTGGAAACGATGTTGCCATGCCTCCACACATTCAGATCCTCTCCTCTGATCCCAATGAGCAGCAGCAACACCATGTACAAATTCAAGACACTAAACCAGTTATAATTGAAAAGGTCCAGAAATGTATTACTTGTGGTGGACCAATTCCCAATAATCCTAAGCGAAAGGGACCCAAGCTAATTCGCTGTGAAAACTGCATTGCACAAGATTCTGTAGACCAGAGAAATAGTCAATTGAATGCAACCCAAATTTTTGTGGCGGCGGAAGACAATGTTAAGTTTGAAGTAAGCACAGTGCAACCGAGTTCGGACCCTCTTTCGACTGTGCAGAGCAATCAGCAAACGCAACAACAGCCACAGCAGCAACAGAAACCTCTTCCTGGCCACCATCCTGTAAAGAGGAGAAACTTAGCATCAGTAACAAAATGTCAGAACTGCAATGGTTCTGGTATTATTTTCGTAGGAGGGAATAAGAATAAGTTAAATAATCCTAATTTGGATAAACCATTCCACTGTAATATCTGTGGAGGTTCCTTTGCCAGATATTCTTCATTGTGGTCACATAAAAAGTTGCACTCTGGTGAAAAGAACTTCAAATGTGGAATATGTGGAATTGCATTTGCTAAGGCTGTATATCTTAAGAATCATTCAAGAATACATACAGGAGAAAAACCATATAGATGTAATACTTGTGGTATGCAGTTTTCACAATCACCGCACTTGAAAAACCATGAACGAACACATTCAGGGGAAAAGCCTTACGTCTGTGAAGTCTGTGACAAGGGTTTTGCGCGGCACGCTACCTTATGGAATCATCGACGTATACACACCGGCGAGAAGCCGTACAAGTGTGAAACGTGCGGATCGGCGTTCAGTCAAGCAGCCCACCTCAAGAACCACGCTAAAGTGCATTCTGGAGAGAAGCCTTTCAAGTGCGACATTTGCACGGCTGCCTTTGCAGATAGGTTCGCGCTCAAAAGGCATCGGGGGATTCACGATAAATACGGTCAAACTGCGCCTCTACCTTCACGAATACAGCAGAATCAACAAGAGCAACAGCAAACACAGAATAGTGAACAACAAAGCACCCCGGCCGTCGAAGTTGAACATCACGCTGAACAAACACTTTGA
Protein Sequence: MFTTNTVQTGTVPTLQYQEHPQKSQGKNIENVQQKNAQQNQQQQQQEFPTFCYTTNVNMIGKLGTGASSGAGNVTSGVNITQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAQDTENNITVVATGVSTGNDVAMPPHIQILSSDPNEQQQHHVQIQDTKPVIIEKVQKCITCGGPIPNNPKRKGPKLIRCENCIAQDSVDQRNSQLNATQIFVAAEDNVKFEVSTVQPSSDPLSTVQSNQQTQQQPQQQQKPLPGHHPVKRRNLASVTKCQNCNGSGIIFVGGNKNKLNNPNLDKPFHCNICGGSFARYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCNTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCETCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGQTAPLPSRIQQNQQEQQQTQNSEQQSTPAVEVEHHAEQTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417101;
90% Identity: iTF_00746086;
80% Identity: -