Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376672.1:721663-737263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0081 17.0 2.9 1 23 225 247 225 247 0.99

2 12 0.012 0.95 10.5 0.2 2 23 255 277 255 277 0.92

3 12 0.32 24 6.1 3.6 1 23 281 303 281 303 0.97

4 12 3.8e-05 0.0029 18.4 0.9 1 23 308 331 308 331 0.97

5 12 0.0053 0.4 11.7 0.4 1 23 335 358 335 358 0.96

6 12 0.024 1.8 9.6 0.1 1 19 370 388 370 391 0.96

7 12 0.00063 0.048 14.6 0.8 2 23 403 424 401 424 0.94

8 12 0.00055 0.042 14.8 1.7 2 23 429 451 428 451 0.96

9 12 4.7e-05 0.0036 18.1 0.1 2 23 470 491 469 491 0.97

10 12 0.002 0.16 13.0 0.8 1 23 497 519 497 519 0.98

11 12 1.5e-05 0.0011 19.7 1.2 1 23 525 547 525 547 0.94

12 12 7.3e-07 5.6e-05 23.8 1.4 1 23 553 576 553 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0081	17.0	2.9	1	23	225	247	225	247	0.99
2	12	0.012	0.95	10.5	0.2	2	23	255	277	255	277	0.92
3	12	0.32	24	6.1	3.6	1	23	281	303	281	303	0.97
4	12	3.8e-05	0.0029	18.4	0.9	1	23	308	331	308	331	0.97
5	12	0.0053	0.4	11.7	0.4	1	23	335	358	335	358	0.96
6	12	0.024	1.8	9.6	0.1	1	19	370	388	370	391	0.96
7	12	0.00063	0.048	14.6	0.8	2	23	403	424	401	424	0.94
8	12	0.00055	0.042	14.8	1.7	2	23	429	451	428	451	0.96
9	12	4.7e-05	0.0036	18.1	0.1	2	23	470	491	469	491	0.97
10	12	0.002	0.16	13.0	0.8	1	23	497	519	497	519	0.98
11	12	1.5e-05	0.0011	19.7	1.2	1	23	525	547	525	547	0.94
12	12	7.3e-07	5.6e-05	23.8	1.4	1	23	553	576	553	576	0.98

Sequence Information

Coding Sequence: ATGGAAGATTTACTAGCATGTCGGGTATGCCTCGCTACCAGCGTGAACCTGTTCGATATGTACAAATATAAAGTCAAAAATCTTTTTGAAATCTTCAGTGGAATTCAAGTGTCTCCAGCAGACAACTACCCACAGTACCTGTGCAGCTACTGCTGCGCTCTGCTCCTCAAATGTAAAGCCTTCAGGGAGCGATGTCAACGCTCACAGGAACTCATGAAGTACGCCGAAATCAAGAGCGGACTTCTGTCAACAGCGCAGATCCACTCCATAGCGGTGTCGCACCACACGGCGCTGCCTCTCTCCGTGTCCTCGCCGGAGTCTACCTCCATCTCCTCATCAGACGTACTCGTCAAGACTGAGGACACTGAAGAGCTGTTCTTTAAGGAAGAGGTGGACTTCAGTGATGAAGAGCCTCTGGCTAATAAGATTAAGAAGAAGGAGCAGGACTCTGCCATCGAAGTAGAAGTCCCGCTCATAGAGACGGAAGACACTGCAGATCTGAACGATTTCGACGAAGAGAGGGCTGACTTCGATGTTAATGTGTCCACAGCGGGCGCCGGTGACGAGTTCGATCTGCCTAACAACGATATTCAGGTGGTATGTTTATCTGTAGAGGAACAGCTGAAAGAAGTGGTGGACAGAAAGAACTCGCTCAACTATATCAACTCGTTCTACAAGTGTGAGCATTGCTACAAAGGGTTCATTCAGGACGCGACATATAAGAACCATATGCTGACACATGATCCGTCCCACGGCAAGGAGACCTGCCCCATCTGTAAAACGCGATGGCGGAACCAGCGATCCTTAAAATCCCATATAGCAGCGGCCCACGATCGGAGATACATCTGCAAAATTTGTTCCCACGTAACCAAGAGCAGCCACAGAGCTAAGGAACACTTAAAATGGCATAAAGGTCATAAGTTCGAGTGTAAAGTTTGCGGGGCTTCGTTCTCTAAGTCTACTAGTTATTTGACCCATTTAAGGTTGCAGCATCCTACTCAATTTTGTTGTGAAGTCTGTGGGGAGAGCTTTTTAGGTGAAAATGGTTTGAAAATGCATATAAGGAAGGCTCATCGGGGGAGTGAGAATGTAAACTTGAAACCACAATTCAAATGTGCAGTCTGTGAGCTATATTTTAAAACTATGGAAGCTTTGAAAAATCACGGTGACAGTTACGAAAACGGCACTTGTGATGGAACTCAATGTTCGTGTTTCCAATGCGGTGAGAACGTACCCTCACAGGATGCCCTCAGAGAACATTTGAAGACTCATGATGCTGGAGTCAAATGTGAAGAGTGCAACAGAACGTTCGCTCACGAACGCTCGTTCTCTATCCACTACCAACGAGTCCACTTAGGCATCAAGCTGAGGCTCAAGCCCAGGGTCAAGAGAAAGAAGGTGCCCTGGGTCTGCGAGATCTGCGGGAACAAGTTCATCTCGAACGCCGCCCTGGTGTACCATCAGCGTACACACACGGGCGAGAAGCCCTACCAGTGCATCGAGTGCCCCAAGAAGTTTAGCGTCTTCCAGAGATTACAGATCCACGTCCGCACGCACACGGGTGAGAGGCCCTTCAAGTGTTTGATCTGCCCGAAGGCTTTCAAACACAAGGCGGCGCTGAACAGGCACGACCGGGTACACTCCGGAGAAAAGCCGTACGAATGCCGTTACTGTGGCAAGACGTTCTCCCAGTCGAACTCTATGAAGCTCCACGTGAGGACCGTGCACCTCAAGCTGCCCGCCCCCTACAAGGGTAGACGAGCAACCATCGACTTCGAGACATTAGACAATGAGATCACCTGTTGCGAAATGACAACCGGTGAGACACCTTCATAA
Protein Sequence: MEDLLACRVCLATSVNLFDMYKYKVKNLFEIFSGIQVSPADNYPQYLCSYCCALLLKCKAFRERCQRSQELMKYAEIKSGLLSTAQIHSIAVSHHTALPLSVSSPESTSISSSDVLVKTEDTEELFFKEEVDFSDEEPLANKIKKKEQDSAIEVEVPLIETEDTADLNDFDEERADFDVNVSTAGAGDEFDLPNNDIQVVCLSVEEQLKEVVDRKNSLNYINSFYKCEHCYKGFIQDATYKNHMLTHDPSHGKETCPICKTRWRNQRSLKSHIAAAHDRRYICKICSHVTKSSHRAKEHLKWHKGHKFECKVCGASFSKSTSYLTHLRLQHPTQFCCEVCGESFLGENGLKMHIRKAHRGSENVNLKPQFKCAVCELYFKTMEALKNHGDSYENGTCDGTQCSCFQCGENVPSQDALREHLKTHDAGVKCEECNRTFAHERSFSIHYQRVHLGIKLRLKPRVKRKKVPWVCEICGNKFISNAALVYHQRTHTGEKPYQCIECPKKFSVFQRLQIHVRTHTGERPFKCLICPKAFKHKAALNRHDRVHSGEKPYECRYCGKTFSQSNSMKLHVRTVHLKLPAPYKGRRATIDFETLDNEITCCEMTTGETPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01340526;
90% Identity: -
80% Identity: -