Mper020673.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376644.1:13376807-13397694[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0008 0.061 14.3 0.1 2 23 109 131 108 131 0.95 2 12 1.8 1.4e+02 3.7 0.3 6 23 141 158 139 158 0.92 3 12 0.019 1.4 9.9 5.1 1 19 193 211 193 216 0.91 4 12 1.3 97 4.2 0.3 5 23 225 243 223 243 0.94 5 12 0.00026 0.019 15.8 0.9 2 23 250 271 249 271 0.96 6 12 4.1e-05 0.0031 18.3 2.3 1 23 279 301 279 301 0.97 7 12 0.00011 0.0085 16.9 0.9 1 23 310 333 310 333 0.98 8 12 0.00019 0.014 16.3 0.2 1 23 339 361 339 361 0.97 9 12 9.2e-07 7e-05 23.5 2.7 1 23 367 389 367 389 0.98 10 12 0.00032 0.024 15.5 1.0 1 23 394 416 394 416 0.98 11 12 2.5e-06 0.00019 22.2 4.2 1 23 422 444 422 444 0.97 12 12 0.00024 0.018 15.9 1.8 2 23 451 473 450 473 0.95
Sequence Information
- Coding Sequence
- ATGATACAGGAAAATGCGGTCAAACGGCAATCCGTCAAAGATGAAGTAACGGCAGATGATATAGTTTGTGCGTTGAATAATGAGGCAGCTTTAGCAGTGATAGATGTTTTCCCTGATGGTCATAGTGATCATGGTGACGCTGATATTCACAACGCTGATGAAGATAATGACGAAGATGACGACTATCTCGACGACATTGCTATAGCAGCACTGAAGCCTAAACGTAAGCGTATTAGAAGAAAAGAAATAACAGAACAAGAGGCAGAAGAGTTTAATCAAATTCTCAAAAAGCCCAATTTGAAAGTGAAGGATTTTGTAAAATTGCAGTGCGATTTCTGCGGCGAGAAACTGAAGACATGGGGTGGCTTACGAGTACACTATGCTAAAGAGCATAAGAGTGAACCATATGTTTACTGCCTGTGTGGCTTTGCAGTACGATCTAAAAGTGTTCTCTACAAACATGTATCGGACCATAAAATAGAAAGCAGAAAATTAAGGAAGAATTCGGAGGAATCTGATGATGAAGAAAAACAAAATTTTAAATATGAGAGTTTGAATGTGAAAGATTTTATTAGGTTTTTATGTCCGCACTGTGACAAGGAGTGTTCCAGTTGGTACCGATTGAAAGCACATTGTGAGTATGCTCACAAAGTATCACCCGTGGTCTCTTGTATCTGCGGCATCACTCTTAAATCCAAGTCAGTCATGTACAAGCATGTACAGGACCATAGGAATCCCAATGTACTGTCATGTGACAAGTGTCCTCGAATAACGAAAACCCTCTCTGCCTTAAATAAACACAAGATGAGACATGTACCAAAATCGGAGAGAAAGTTCTGTTGTGCTTCATGTGACAAGATATTTACTTCTAAGGATGCGTTGAAATCTCACGAAAGGTCGCATATACCAATAGAAGAGCGGAAAATTTATCGTTGTGATATGTGCAACATGAAGTTCACGACGCGCTCGTCGGCGGCGTCGCACAAACGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCATCGCGCCATCCACAGCGACGACAAGCCCTTCGTCTGCAGGAAGTGCTCCAAACCTTTCAAGACTTATTCAAACCTGAAGACGCACATGGACACTCACGAGGACACCTCGTACGAGTGCTACATCTGCCGGCGAGTGCTGAACAGCCGGCGCACGCTCCGCAAACACCTGCTCGTGCACGAAGACAAGTGCAGGCATGTGTGCTCCTACTGCAATAAGGCGTTCAAGAGAAGACAGACTTTAAAGGTGCACATGTACACCCACACGGGTGACAAGCCGCTGACGTGCGCGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACGCCGACCAACTGGCGGCGCGCGCGCGGCCCTGCCCCACCTACGACGTGCAAGCGGTGAGCTCTCAACACTCACTCTACGCAAATTACATCAAGAATGACGTGGCACCTGTTAATGTTCCAGTAGCGAAGAACGAAGTTGAGGCTATGTAA
- Protein Sequence
- MIQENAVKRQSVKDEVTADDIVCALNNEAALAVIDVFPDGHSDHGDADIHNADEDNDEDDDYLDDIAIAALKPKRKRIRRKEITEQEAEEFNQILKKPNLKVKDFVKLQCDFCGEKLKTWGGLRVHYAKEHKSEPYVYCLCGFAVRSKSVLYKHVSDHKIESRKLRKNSEESDDEEKQNFKYESLNVKDFIRFLCPHCDKECSSWYRLKAHCEYAHKVSPVVSCICGITLKSKSVMYKHVQDHRNPNVLSCDKCPRITKTLSALNKHKMRHVPKSERKFCCASCDKIFTSKDALKSHERSHIPIEERKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCAWCDERFSYASTLRSHRLRCHADQLAARARPCPTYDVQAVSSQHSLYANYIKNDVAPVNVPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029509;
- 90% Identity
- iTF_00851039;
- 80% Identity
- -