Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376673.1:7471382-7474126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.21 16 6.7 2.4 1 23 52 75 52 75 0.94

2 15 0.0011 0.084 13.8 0.3 2 23 102 124 101 124 0.95

3 15 0.02 1.5 9.8 2.3 2 23 147 168 146 168 0.96

4 15 0.00033 0.025 15.5 0.0 1 23 172 194 172 194 0.97

5 15 0.075 5.7 8.0 2.5 1 23 199 222 199 222 0.95

6 15 0.049 3.7 8.6 0.6 3 23 300 321 298 321 0.91

7 15 0.028 2.1 9.4 0.2 2 23 347 369 346 369 0.93

8 15 0.0018 0.13 13.2 1.0 2 23 392 413 391 413 0.97

9 15 0.00045 0.034 15.0 0.0 1 23 417 439 417 439 0.98

10 15 1.5e-05 0.0011 19.7 1.6 1 23 444 467 444 467 0.98

11 15 0.032 2.4 9.2 0.4 2 23 475 497 474 497 0.94

12 15 5.1e-05 0.0038 18.0 2.1 2 23 505 527 504 527 0.96

13 15 7e-05 0.0053 17.6 2.4 1 23 533 555 533 555 0.98

14 15 2.2e-05 0.0017 19.2 0.6 1 23 561 583 561 583 0.99

15 15 9.5e-05 0.0072 17.2 2.6 1 23 589 612 589 612 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.21	16	6.7	2.4	1	23	52	75	52	75	0.94
2	15	0.0011	0.084	13.8	0.3	2	23	102	124	101	124	0.95
3	15	0.02	1.5	9.8	2.3	2	23	147	168	146	168	0.96
4	15	0.00033	0.025	15.5	0.0	1	23	172	194	172	194	0.97
5	15	0.075	5.7	8.0	2.5	1	23	199	222	199	222	0.95
6	15	0.049	3.7	8.6	0.6	3	23	300	321	298	321	0.91
7	15	0.028	2.1	9.4	0.2	2	23	347	369	346	369	0.93
8	15	0.0018	0.13	13.2	1.0	2	23	392	413	391	413	0.97
9	15	0.00045	0.034	15.0	0.0	1	23	417	439	417	439	0.98
10	15	1.5e-05	0.0011	19.7	1.6	1	23	444	467	444	467	0.98
11	15	0.032	2.4	9.2	0.4	2	23	475	497	474	497	0.94
12	15	5.1e-05	0.0038	18.0	2.1	2	23	505	527	504	527	0.96
13	15	7e-05	0.0053	17.6	2.4	1	23	533	555	533	555	0.98
14	15	2.2e-05	0.0017	19.2	0.6	1	23	561	583	561	583	0.99
15	15	9.5e-05	0.0072	17.2	2.6	1	23	589	612	589	612	0.97

Sequence Information

Coding Sequence: ATGAGTATAGCAAATTCTACAGCAGCAAGTTCATCATGCAAAACTGAAGTGTCGAAATGGTTAAATAATGAAGTTTACAAGCATAAATCGAATATAATAGAAataatgcgttggtccaacgctactccaataaaactgtgtggagatatgggttacatgtgttgtcactgtgaagagcagttccttgagccagaagatctcaagaaacataccctacaagtccatgaagacgtttccaaagcctacttcataaagaacttgagcatgtatcattacatcatcaaattagacatcactggtctgcagtgcaagatatgtaacaaaagtatcgacactactgaagaattaatggatcacttgaagaatgaacacaagaaagtgttatatattgatatcaaaaaccacatagtccctttcaagttcaccacaaaacccctcgaatgttttatttgcaagaatgtttttaacaaattcaaattactactcacacatatgcatatacactataggaactacatctgtgatatctgcgatgctggtttcgtgaatgagtctgggcttaacgtacataaatccatacacaaaattgggaccttcacttgtagcacttgctctatgaaattcgaaacactgactaagagaaaccggcatgtgaaggccagacataccaaacttattcgtcacacgtGTCACGGACGGGGAACTAGGATTATCAGAATAGAAAAACCGACAAAATCAACCGTTGAATTGAACTTCATCTCAAAATTAACATCGAGAAACCCAAATTCCATCCTAAAAGGCTTATCTGAAACTGTTAAGAACAAAATgaatttaaaaaatatattgctgaactccaatgctaaccccatacgatgtaaagatggtcatggatatggctgttctttctgttcaaaacagtttcaggagccgactgcactcaagaagcactttttggaagaacataacaatgacaaactgataaagtacatgacctctaagctatttgaacatgtcatcaagctagacataacgtacttgaactgtgctctttgtgacaaagacgtcacacatttgcaagaccttgttgcacatctgaaggacgaacacaacaagccgatgtatctagacgccaaaagtcaaatcgtcccgttcagattcgactcacccgaactaaaatgtgccatatgctccacagaattcagttatttcaaacgtttacaggagcatatgaattcacatttcggcaattatatttgcgaagtatgtggagcaggatttgtgacggacagacttctattgaaccacgtcagacggcatgacagcggagagtacaaatgtgatcaatgtgacaaaacttttacgaaccagattaaaatacgcgagcacatacagcgaacacatctaggtcagagaaagagaaataaatgcaattactgcgacgcaagattcgttgattactggaagaaaatggaccatatggtgaaagagcatggaatgcctcccgtcgtccttaaatgttctgcttgtgaccgtacttttagagaccaaagatcgttgtcgcggcacacgaagaaagatcacctgttggagagaagacacaagtgtagtgaatgcgacatgagattctttgcaaagagtggtttgcagaaacatatggccaagcacacggggctgaggcagttcagatgtgaagtttgcttaaaggcttatggaaggaagaatacgcttcgagagcatatgaggattcatgcgaatgataggaggttcgcttgcaatcgctgtgggcaagcgttcgttcaaaagtgtagctggcggagtcacatgcgttctaagcatggagaagaagtgtaa
Protein Sequence: MSIANSTAASSSCKTEVSKWLNNEVYKHKSNIIEIMRWSNATPIKLCGDMGYMCCHCEEQFLEPEDLKKHTLQVHEDVSKAYFIKNLSMYHYIIKLDITGLQCKICNKSIDTTEELMDHLKNEHKKVLYIDIKNHIVPFKFTTKPLECFICKNVFNKFKLLLTHMHIHYRNYICDICDAGFVNESGLNVHKSIHKIGTFTCSTCSMKFETLTKRNRHVKARHTKLIRHTCHGRGTRIIRIEKPTKSTVELNFISKLTSRNPNSILKGLSETVKNKMNLKNILLNSNANPIRCKDGHGYGCSFCSKQFQEPTALKKHFLEEHNNDKLIKYMTSKLFEHVIKLDITYLNCALCDKDVTHLQDLVAHLKDEHNKPMYLDAKSQIVPFRFDSPELKCAICSTEFSYFKRLQEHMNSHFGNYICEVCGAGFVTDRLLLNHVRRHDSGEYKCDQCDKTFTNQIKIREHIQRTHLGQRKRNKCNYCDARFVDYWKKMDHMVKEHGMPPVVLKCSACDRTFRDQRSLSRHTKKDHLLERRHKCSECDMRFFAKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDRRFACNRCGQAFVQKCSWRSHMRSKHGEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -