Mper004378.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melanchra persicariae
Gene Symbol
-
Assembly
GCA_947386135.1
Location
OX376668.1:12077028-12093253[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.42 32 5.7 0.2 1 23 14 36 14 36 0.95
2 33 1.9e-05 0.0014 19.4 0.2 1 23 47 69 47 69 0.97
3 33 0.00053 0.04 14.8 2.7 1 23 75 97 75 97 0.98
4 33 0.013 0.98 10.4 0.3 5 23 132 150 128 150 0.94
5 33 0.00053 0.04 14.8 2.7 1 23 156 178 156 178 0.98
6 33 0.013 0.98 10.4 0.3 5 23 213 231 209 231 0.94
7 33 0.00053 0.04 14.8 2.7 1 23 237 259 237 259 0.98
8 33 1.7e-05 0.0013 19.5 4.3 1 23 266 288 266 288 0.99
9 33 8.8e-06 0.00066 20.4 0.4 1 23 294 316 294 316 0.93
10 33 1.5e-06 0.00012 22.8 0.2 1 23 322 344 322 344 0.98
11 33 7.6e-06 0.00057 20.6 1.9 1 23 350 373 350 373 0.96
12 33 0.00014 0.011 16.6 3.0 1 23 379 402 379 402 0.96
13 33 0.00011 0.0087 16.9 2.3 2 23 409 430 408 430 0.97
14 33 1.6e-05 0.0012 19.6 1.0 1 23 436 458 436 458 0.97
15 33 0.11 8.6 7.5 0.0 1 22 468 489 468 489 0.96
16 33 0.11 8.6 7.5 0.0 1 22 505 526 505 526 0.96
17 33 0.11 8.6 7.5 0.0 1 22 542 563 542 563 0.96
18 33 0.11 8.6 7.5 0.0 1 22 583 604 583 604 0.96
19 33 0.11 8.6 7.5 0.0 1 22 620 641 620 641 0.96
20 33 0.11 8.6 7.5 0.0 1 22 657 678 657 678 0.96
21 33 0.11 8.6 7.5 0.0 1 22 703 724 703 724 0.96
22 33 0.11 8.6 7.5 0.0 1 22 740 761 740 761 0.96
23 33 0.11 8.6 7.5 0.0 1 22 777 798 777 798 0.96
24 33 0.11 8.6 7.5 0.0 1 22 814 835 814 835 0.96
25 33 0.11 8.6 7.5 0.0 1 22 851 872 851 872 0.96
26 33 0.11 8.6 7.5 0.0 1 22 892 913 892 913 0.96
27 33 0.11 8.6 7.5 0.0 1 22 929 950 929 950 0.96
28 33 0.11 8.6 7.5 0.0 1 22 966 987 966 987 0.96
29 33 0.11 8.6 7.5 0.0 1 22 1072 1093 1072 1093 0.96
30 33 0.11 8.6 7.5 0.0 1 22 1109 1130 1109 1130 0.96
31 33 0.11 8.6 7.5 0.0 1 22 1146 1167 1146 1167 0.96
32 33 0.11 8.6 7.5 0.0 1 22 1187 1208 1187 1208 0.96
33 33 0.11 8.6 7.5 0.0 1 22 1224 1245 1224 1245 0.96

Sequence Information

Coding Sequence
ATGATGCGACACTTGAAGTCAGTCCACGACGCCAGGATATACTTGTGTCGCTTCTGCGGCGCAGTCATGAGGCGGCGCACGGAATATGCAACGCATATAGCGTCCCACGCGTCCGACAGCACGGCCGGCCGCCTCGCGTACCGCTGCGATGAGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCCAGGCCCCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCATCTCAAGACGCATGCGGCCCCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCATCTCAAGACGCATGCGGTAACTATACACATATGCGGAACGAGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCCAGGCCCCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCATCTCAAGACGCATGCGGCCCCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCATCTCAAGACGCATGCGGTAACTATACACATATGCGGAACGAGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCCAGGCCCCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCATCTCAAGACGCATGCGGTACGTCCGCGTCCCTACAAATGTAACCATTGCGGAAAATCATTCCTCACACAACAGAATCTGAACCAGCATGAGAAAACGCACTCGGGCGTTAAGGATTTCGTCTGTAACATATGTAGCAAAGCCTTCAGCACGCAGCACAACTTAGAAGTCCACGGGGTAGTTCACTCGGGGAACAAAGCTTTCATATGCAGCGTGTGCAGCAAGGCGTTTGCGAGGAGAGCGGAACTGAGGGACCACATGCGGATACACACGGGTGAGCGTCCATTCTCGTGCGACATATGCGGCGCTCGCTTCACGCAGCGCTCGAACCTGCACTCGCATCGCAGAGCCACGCACTTCGACGATAAGCGATACCACTGCGAACAGTGCCCCAAGAGGTTTAAAAGGAGGAGGCTCCTAGAGTACCACATAAAGGCGTCGCACACGGGCGAGCGGCCCCTCAAGTGCGGCATCTGTCACCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCATGTGCGCATACACAGCGGGGAGAGGCCGTACGTTTGTGAGATCTGCGGCAAATCGTTCAACTCCCGCGACAATCGCAACACACACCGCTTCGTCCACTCCGACAAGAAGCCCTACGAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGAAACCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGAAACCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACACAGGAAACCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGAAACCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACACAGGAAGCCTTACGAGTGCGTCGCGTGTGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCTGAAAACGGAAACGGAAGTGAATCTAGCAGATGCCAAATTCTACATCACAGAAGATAAGAAGTTAATATTACAAGACAGCGATAACTTAAGCGAGAGAGCTGAAGGCACTATTCTAGAAGCAGTTGATGTCGATCAACTTGGGGAACAGACTGAGATAATGGCAAACGACGAAAATGGCGGTATGGTGCGGCTTATACAAATCAAGTTACCAGACGGGAACAATGGCTGGGTCGCTATCAACCGTTGA
Protein Sequence
MMRHLKSVHDARIYLCRFCGAVMRRRTEYATHIASHASDSTAGRLAYRCDECGKSYSSRTLLAEHANLHSGARPHQCGVCGKAFASKYTHQAHLKTHAAPPVRRLREGLRLQVHASGASQDACGNYTHMRNECGKSYSSRTLLAEHANLHSGARPHQCGVCGKAFASKYTHQAHLKTHAAPPVRRLREGLRLQVHASGASQDACGNYTHMRNECGKSYSSRTLLAEHANLHSGARPHQCGVCGKAFASKYTHQAHLKTHAVRPRPYKCNHCGKSFLTQQNLNQHEKTHSGVKDFVCNICSKAFSTQHNLEVHGVVHSGNKAFICSVCSKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCEQCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYEKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYEKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYEKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTQETLRVRRVRRRLHAQTAALRAHEHQRTYHNTTQHNTQEALRVRRVRRRLHAQTAALRAHEHQRTYHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYEKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHRKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTQEALRVRRVWRRLHAQTAALRAHEHQLKTETEVNLADAKFYITEDKKLILQDSDNLSERAEGTILEAVDVDQLGEQTEIMANDENGGMVRLIQIKLPDGNNGWVAINR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-