Mper002707.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376660.1:7663133-7666183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-09 1.3e-06 28.5 0.0 4 41 40 76 37 79 0.85 2 2 7 3.3e+03 -1.7 0.0 18 22 154 158 150 166 0.53
Sequence Information
- Coding Sequence
- ATGAAACTAGAACTCTCCAGATCTGAAGAGAAGACTCCAGTCGTGAAGATGGAGCAAAATTGGATGTCGGAGACTCGAAGTAGGAACAAAGGATTGAAGGTGAAATGGAGCCAAAATGATTTGAGTAGGGCATTCAAACTTGTTGAAGAAGGAACACCGATAAGAGAGGCAGCTCGGTCTTATGGCATCCCATTCTCAACTCTGCAAGAAAGACTGAAAAAGAAGAATAGTGAATTACCAGCTATGGGTCGAAATCCAGTCTTCACTAAAGATCAAGAAGCAGAAATGGCAGACCAGGTAAAATTCCTTGGTAACATATTTTATGGCTGCACTTCAATTCAGATAAGGAAGATGGCTTTTGAATACGCAGTTAAAAATGGCATAAAACACAACTTTAATAACACCCTTGGAATGGCTGGCAAAGATTGGCTTAGAGGATTCATGAAAAGAAATAAATTGTCTGTTCGGAAAGCTGAAGGCACAAGTATGAATAGAGCTACAGCTTTTAACAAAAATGAAGTTGCCATATTTTTTAAGCTTCTTGAAGAGTTAATGGAGAAATATAAGTTTCTACCAAGGAACATTTACAATGTGGATGAAACTGGTATCTCCTCAGTGCAAGAGCCAGGAAAAGTTGTTACTGAGAGAGGTCAAAAACGCGTGGGCTCTATAACTTCCGGTGAAAGAGGGAAGACAGTTACAGCTGTTTGTGCAGTGAGTGCTACTGGAGGTTATCTTCCGCCAATGTTGATATATCCTCGTCAGAGACATTCACCGGCATTGGAAAGCGATGGTCCACGTGGAGCTATATTTCGGTGCTCGAAGAATGGATGGATCAACGAAGACCTATTTTTAGACTGGCTGAAGCATTTCGCCGATTTTACAAAACCATCAGAGAACGAACCAATACTGCTAATTTTAGACAATCACAGCAGTCACATCTCTTTGAGAGCCTATGAGTTTTGCAAAAAAAGTAACATAGTAATGCTGTCATTACCTCCACATGCCTCTCATCGAATCCAGCCATTGGATGTTTCCATATATGGTCCATTGAAAGCTGCCTACAAGCAGGAATGCAATTTATTTATGAAAAATGAATTAGGACGAAAGATCACACAAAACGACATTGCCTCACTTTTCAGAAAAGCTTTTCAAAAGGTAGCGACCATCCCAAAAGCTGAAGCAGGTTTTTCTACTACAGGAATATATCCTCTGAACCCAGACGTGTTTACAGATGAAGACTTTCTGGCTGCTGAAATGTTAAACAGCAGTGAATTGATGGTATCGGTAGAAAATATGCACGACCAAGGCAACAAAACTCCAGAAGCTCAAATTAACCCATTAAATACAGAGCCCACATACCCAAATATAATAGCACCTAATTCACCATCACTTTTAACCGACTACACCCAAACAACACCAGGAATTAGCCCTGTCGCATCTCCCCAAGTCCTGCAACCGATAATAGACAATGCCATTCCCTCAACTTCAGGAATTACCGCCAAAGATCTTCTATCAGTTCCGAAGAAACTCACACACAATCAGAAAGTGCAGGGAGCCTCTCGAAAACAACATGCAACTGTTTTAACAAACACTCCGAATAAGGAAGCTTTGGTACAAAAAGAAGAGAGAAGAGCAACAAGGGAAAAGAAGAAAGCCAAAACAAAAGGAGGAATAAAAAAAGCAACAAAAAAAAGACCAGCTAAATTCACTAATGTCAGAAAGGTAAAAAAGAGAGTTCTCCAAGATGAAAATGTGGACCAGAGTTCATCAGACTCCGAAATCGAAATGACTGACGTACGCGATGATGATGATGACACTGATGTCGAAGATCTGGAGAACAGATGCATGTTATGTGACGAttatggccggaacaacgagctttggtacaggtgcgtacagtgtgggctttgggctcatgctgagtgctcgggttatgagtctcccgaaggctacgtgtgcgacttgtgccgctaa
- Protein Sequence
- MKLELSRSEEKTPVVKMEQNWMSETRSRNKGLKVKWSQNDLSRAFKLVEEGTPIREAARSYGIPFSTLQERLKKKNSELPAMGRNPVFTKDQEAEMADQVKFLGNIFYGCTSIQIRKMAFEYAVKNGIKHNFNNTLGMAGKDWLRGFMKRNKLSVRKAEGTSMNRATAFNKNEVAIFFKLLEELMEKYKFLPRNIYNVDETGISSVQEPGKVVTERGQKRVGSITSGERGKTVTAVCAVSATGGYLPPMLIYPRQRHSPALESDGPRGAIFRCSKNGWINEDLFLDWLKHFADFTKPSENEPILLILDNHSSHISLRAYEFCKKSNIVMLSLPPHASHRIQPLDVSIYGPLKAAYKQECNLFMKNELGRKITQNDIASLFRKAFQKVATIPKAEAGFSTTGIYPLNPDVFTDEDFLAAEMLNSSELMVSVENMHDQGNKTPEAQINPLNTEPTYPNIIAPNSPSLLTDYTQTTPGISPVASPQVLQPIIDNAIPSTSGITAKDLLSVPKKLTHNQKVQGASRKQHATVLTNTPNKEALVQKEERRATREKKKAKTKGGIKKATKKRPAKFTNVRKVKKRVLQDENVDQSSSDSEIEMTDVRDDDDDTDVEDLENRCMLCDDYGRNNELWYRCVQCGLWAHAECSGYESPEGYVCDLCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700040;
- 90% Identity
- -
- 80% Identity
- -