Msac005278.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- stc
- Assembly
- GCA_002803265.2
- Location
- NW:2609122-2624199[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.94 1.1e+04 -4.0 1.6 15 19 148 152 147 152 0.81 2 14 0.038 4.4e+02 0.4 0.5 4 10 180 186 179 186 0.96 3 14 5.1e-06 0.059 12.8 16.7 3 18 201 216 200 217 0.94 4 14 5.8e-08 0.00068 19.0 9.9 3 19 255 271 253 271 0.92 5 14 7.7e-08 0.0009 18.6 10.6 1 18 490 507 490 508 0.94 6 14 0.13 1.5e+03 -1.2 0.4 5 10 539 544 539 545 0.90 7 14 7.4e-05 0.87 9.1 13.2 4 18 557 571 550 572 0.86 8 14 1 1.2e+04 -4.2 2.5 5 10 598 603 598 603 0.94 9 14 0.0016 19 4.8 7.6 1 11 609 619 609 620 0.95 10 14 0.44 5.2e+03 -3.0 2.0 4 10 624 630 623 630 0.91 11 14 1.1e-06 0.012 15.0 9.5 1 18 636 653 636 653 0.92 12 14 1 1.2e+04 -4.8 9.6 9 18 700 710 690 711 0.81 13 14 0.24 2.8e+03 -2.1 21.3 1 19 747 767 737 771 0.78 14 14 1.8e-05 0.21 11.1 13.5 1 17 777 792 777 796 0.90
Sequence Information
- Coding Sequence
- ATGCCGAGAACTAGCAGTCGTAAAAGAAACAGTCGTCGAATTGATAGTACAATCAGGGTTACTTCCAATTTATCGCCAAACGCTCCAGAATTTATTCCTCTAAcagataatgataataatgctATTCAAAGAGAAAATGTGATCATTAGATCAATGACATTTAGTGCAAGTTCCAGTGCATCAAATAGTAGTGGGAATAATAGTAACTCTAATTGTGAAGCTTCTAGTTCAATTTCAACTATACCAGATGCATTACAACATAAAAGTCAAAGAGATTTACTTATCAGTCTTTTAAATGAATGCAAAGTAGATTGTGTGATATGTTATGAGCGAGCTAAAAATGTAGAACAAATTTGGAACTGTCGTAATTGTTACcaaattatgcatttaaaatgcGTATTAGTTTGGTTCCTTAAATCTCATCGTAatGCTGTTTGGAGATGTCCAGCATGTCAAAGTGAAATGACTggaaaaccaaaatatatttgtttttgtggAACTTTACCAAAtccatatcataataatgtggATACTCCTCATTCATGTGGTCAAGTTTGTGGATTGCAAAGAAAAAATTCTAATCTAAACTATGACGATTGTCATCATAAGTGTACACTACTTTGTCATCCTGGTCCTTGTCCACAATGTGTTGTACAAGTCTtaagATCATGTGCATGTGGAAAAAAACGAGTTTATGCTCAATGTGGACAGTCAACCCAGATTATATGcaacaatatttgtttcaaaacattaaactGCTTTTCCcataaatgtgaaaaaatgtGCCATGTTGGCAGTTGTGAACCATGTACTAAAGGCTGTCCTCAAAattttaatccTCCAGAAGAAACTTTCGCTATGTCGAATGAAAGATTTGCTAATGCAATTTTAGAGGTTAATCGATTACCGCCTGAATCAATAGTAACAGAGGAAGAATTAAGAATGCTAGGGTTGAATCCAGAAGAATTATTTGAACGCAGGAATGTTcctaattcatattattctgcttctcatattaataatattgttgctgGTATTGGTCATTTTTATCAAGAAGAAGATGGTTCTGTTGATGATttaattgatgaaaataatgtgGAACGAATTGTATATGGTATAGATTATGGAATGAATAGTCGTTCATTATTTCCTTCGATGTTACATTTCCCACGTTCTGTTTACCCTCGTGGCGATTCATTTTTTGAGAATTACTCTGATGACAGTGAAGAAAATAGTGATTATGAAGTAGAAGATGACGATGATGGTGAtggtgatgatgatgatgatgatgatgatgatgatgatgataatgatgatgatgatgataatgattATGAAGATTGTGACtcaaataatgataatcatAtatgtTATTGTGGGAAATCAGAGCGACAAGTACCATGCACTCAAGAGAATGCCATGGTGATGTATTACAGCTGTGGAAATctgtgtgaaaaaaaattgtcttgcGAAAATCACTTATGCCAGAAAGTGTGTCATGTAGGTCAATGTGACCCATGTATAGCTTTATCTGTTAATAGATGTCCTTGTGGAAAACGGTCATTGACTGAAGATGAACTTGGCAACCGTACATTATGCACACAACCAGTACCCACGTGTGACCAACCATGTGGAAAACCTCTAGAATGTGGTCCCCCAGaaaATCCACATCTTTGTGAACAAAAGTGTCACGAAGGCCCATGTGTTCGCTGTGAACGGAAAaccaaatatgtatgtaaatgtGGTAGTAGATCCAaggaaataaaatgtaattctgTGACTAGTGAATTgacttgcaaaaaaaaatgtaacaagATGATGTCTTGTGGTAAACATAGATGTATGACAGTATGTTGTAATGCACAAGAACATATATGTACTAGAACTTGTAATGGACTATTAAATTGCCGTAAACATCGTTGTGATCGTGTCTGCCATACTGGCAGCTGTGCAATATGCTTTGAAGCAAgttttgAAGAGTTATATTGTCGTTGTGGCAATAGTTTCATTTCTCCTCCCATCAGGTGTGGTACTCGTCCGCCATTATGTACATTACCTTGTTCAAGGGAACATGAATGTGATCATCCAGCTACTCATATATGTCATGACGAGGAAGAATGTCCTCCTTGTATAGCTCTGACTGAAAAGTTATGTTATGGTGGTCATGagctGCGATTTGCTATACCAtgtcatataaaaaatgtatcatgtgGAATGCCTTGTGGCATTCCACTTCCCTGCAAAAGACATACTTGTGTCAAACCATGTCATCCACCACCATGTAACACTGGTCCATGTCAGTTACCATGTAATTTACCTAAAACGGATTGCAGTCATCCATGTTCTAAACCTTGTCATGATGGTTCATGTCCGCCAGTAGCATGCAAAATAATGgtGAGTGTTAGTTGTATTTGTGGGAATTTGACAGAAGCTAGGATATGTTCTGACCCCAAGGTGGTTGAATATCGTCTTCAAGTTAAAGTACAATCAATGAACTTCCTAGACAATATTGTTAACTCATCGCCAATCATAAAgtcgtataaaattttggaGTGTACAACAGAATGTGCTAAATTAGAAAGAAATCGCCGTATTGCCCTTGCACTTCAAATCCGCAATCCAGATTTATCTCCTAACGTCACTCCTCGATATTCAGATTTCATGAAAGAATTTGCAAAAAAAGATGCATCATTCTGTAATTATGTCCATGAAAAACTTGCTTTATTAGTCACTAATGCCAAACAATCTAAACAAAATTCTCGAAGTCATTCATTTGAAgtaatgaaatatgaaaaacgGAAATTGATTCATGAATATAGCGAACATTTTGGATGTGAATCAATAGCTTATGACGCTGAACCAAATAGAAATGTTGTAGTTACAGCTCTTaaagaaaaatcaTGGCTTCCCAATTATAGTGTGGTAGAAGTTATACAACGTGAAAGTGGATGTCCACGAGTCAACCCATTTGCAAGTATTCAAAAACGAAACACTGTTATTCTGaacaaaaaactttaa
- Protein Sequence
- MPRTSSRKRNSRRIDSTIRVTSNLSPNAPEFIPLTDNDNNAIQRENVIIRSMTFSASSSASNSSGNNSNSNCEASSSISTIPDALQHKSQRDLLISLLNECKVDCVICYERAKNVEQIWNCRNCYQIMHLKCVLVWFLKSHRNAVWRCPACQSEMTGKPKYICFCGTLPNPYHNNVDTPHSCGQVCGLQRKNSNLNYDDCHHKCTLLCHPGPCPQCVVQVLRSCACGKKRVYAQCGQSTQIICNNICFKTLNCFSHKCEKMCHVGSCEPCTKGCPQNFNPPEETFAMSNERFANAILEVNRLPPESIVTEEELRMLGLNPEELFERRNVPNSYYSASHINNIVAGIGHFYQEEDGSVDDLIDENNVERIVYGIDYGMNSRSLFPSMLHFPRSVYPRGDSFFENYSDDSEENSDYEVEDDDDGDGDDDDDDDDDDDDNDDDDDNDYEDCDSNNDNHICYCGKSERQVPCTQENAMVMYYSCGNLCEKKLSCENHLCQKVCHVGQCDPCIALSVNRCPCGKRSLTEDELGNRTLCTQPVPTCDQPCGKPLECGPPENPHLCEQKCHEGPCVRCERKTKYVCKCGSRSKEIKCNSVTSELTCKKKCNKMMSCGKHRCMTVCCNAQEHICTRTCNGLLNCRKHRCDRVCHTGSCAICFEASFEELYCRCGNSFISPPIRCGTRPPLCTLPCSREHECDHPATHICHDEEECPPCIALTEKLCYGGHELRFAIPCHIKNVSCGMPCGIPLPCKRHTCVKPCHPPPCNTGPCQLPCNLPKTDCSHPCSKPCHDGSCPPVACKIMVSVSCICGNLTEARICSDPKVVEYRLQVKVQSMNFLDNIVNSSPIIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDASFCNYVHEKLALLVTNAKQSKQNSRSHSFEVMKYEKRKLIHEYSEHFGCESIAYDAEPNRNVVVTALKEKSWLPNYSVVEVIQRESGCPRVNPFASIQKRNTVILNKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -