Msac010231.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melanaphis sacchari
Gene Symbol
-
Assembly
GCA_002803265.2
Location
NW:27175-38898[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.3e-06 0.00031 20.4 1.4 1 21 179 199 179 200 0.96
2 19 8 5.8e+02 0.7 0.1 9 21 216 228 214 229 0.84
3 19 9.8e-09 7.1e-07 28.8 1.2 1 23 236 258 236 258 0.98
4 19 5e-05 0.0036 17.1 2.6 1 23 264 286 264 286 0.98
5 19 0.01 0.75 9.8 3.2 1 19 292 310 292 314 0.92
6 19 0.0037 0.27 11.2 2.2 1 23 320 343 320 343 0.94
7 19 5e-07 3.6e-05 23.4 5.1 1 23 349 371 349 371 0.99
8 19 5e-06 0.00036 20.2 5.7 2 23 378 399 378 399 0.97
9 19 1.1e-06 7.8e-05 22.3 1.4 1 23 405 427 405 427 0.98
10 19 0.00022 0.016 15.0 1.3 1 23 433 455 433 455 0.98
11 19 3e-05 0.0021 17.8 0.9 1 23 461 483 461 483 0.99
12 19 0.001 0.073 13.0 3.4 1 23 489 511 489 511 0.99
13 19 6.6e-06 0.00048 19.8 1.0 1 23 517 539 517 539 0.98
14 19 2.8e-06 0.0002 21.0 2.9 1 23 545 567 545 567 0.99
15 19 2.9e-08 2.1e-06 27.2 0.7 1 23 573 595 573 595 0.98
16 19 0.11 8.3 6.5 6.8 1 23 602 624 602 624 0.97
17 19 0.00062 0.045 13.6 1.2 1 23 630 652 630 652 0.99
18 19 0.015 1.1 9.3 1.0 2 23 661 683 661 683 0.96
19 19 0.00039 0.028 14.3 5.6 1 23 688 710 688 710 0.98

Sequence Information

Coding Sequence
atgcaatattgtCACTTATTACTGACTACTGTTCATCAGTGCCGAATCAAGAGAGGAGAATCGAGAAAGTTTTTTGaaactaaattttcaaaaatcaaattacgaaaaaaaaaacttttattgggAAAAATTGCAGAAAATGAtaataaaatattaaaagtatcacTTGAAAGATgtgataatcaattatttcataaccAACAAGATATCAAAGaagaaatttttgaatttgaagaCTCAGATATTACTATTGAAGAAGATGATTTTCTcaaaaatatcaaacaggAAAACAATGATGTAATGATTAAACCTATTCAGCAAATAGAACAACAAAATGTTCATGCAAATAATGAGGAAGGATTTATTCTCTCAAAttcaTTTAATTCTAAAGAAAATGATGACTCTGCTATCTGTAATGatgtaaaatatgaagttGACTGCATtgataatatggtatatagtAGCATTATTGAAATTGAACCTGTAAATTTGCAGTTAATGTTAAATGATAGCGAgtctgaagaaaaaaaatcttacaaaTGTCAACTCTGTAAAGAATCATTTTCAACAAGAagagatttaaataaacaccAGAAAATTCCTAAGAAAATTCTTAACATGTAttacaaatctaaaaattctcaaaaatttaatgaagaatcaaacttaaaaagcCATAATAAAACACCTGACCAGAAAATGACTTTTAACTGTGATTACTGCAATAAGGTTTTTActgttaaatcaaatttaacggTACATATAAGGACACATACTGGAGTAAAACCATACATATGCAATCTATGTCAAAGACCTTTtgctcaaaaacaaaatttaatgtgtCATATGAGAACACATACTGGGTATAAACCTCATACGTGTCGCATTTGTAAAATGACATTTGGTCACaagtcattattaaattaccatGAATGGACGCACACTGGTGTTAAACCATTTAAATGTGAAATTTGTGCTATAGAATTTTCACGAAAATCGAGTTTAGTTTTTCACCAAAAACACAGTCATACAGgagaaaaactttttaaatgtcatgATTGTGATGAAACTTTTTATcgaaaaacttttttgaagAATCATATGCGAGTCCATAATACTGTACAATTAGAAGAATGCCATATTTGCGAGAAAAAGTATTCTCACAAATCAAGTTTAAAAAGACATTTATTGACCCATGCAGGGGAAAAGATGTTTGAATGTGAAATGTGTAAAAAGTCCTTTTATCGGAAATTTAGTTTACTTGCTCACATAAAAGTTCATATGACAGAAAGACCTTATGAATGCCATCTCTGCAGATCAAAATTTCCTACAGCATCAGAACTAGAAAGTCATGAAAAATCTCACACTATTGATGAACCATTTCAATGTCAACTTTGCGATTCAAGTTTTACACTACAATCACTTTTAGATATGCATATGAGATCTCATGCTGGAGATAGACCATATCAGTGTCCTCATTGTTTAGTGACATACGCACAAAAGAAAAGTTACTCTTACCACTTAAAAACTCACAGAGatcataaattgtatagatgTGATATATGTAAtgcaacattttttcaaaaaaataagttaattgatCATATGAGATTACATACTGGTACAAAACCTTATAAATGTCCTGTTTGTAACAATAGATTTACACAAAAAGATGTTTTACACTCACATATGAGAACTCACAGTGttgaagataaatataaatgcgaTATATGTGgagttttttttacacaaaaatcaaatttgattAAACACATTAAAGAACATCCTGCcttcaaatcaaattttaattgtagattttgtaaaacaaaatttgtacaaaaatctACTTTCATGTGTCACATGAAAATTCACtctgaaaataattcatataaatgtaGTATTTGTGGTATttcatttctattaaaaacagACATGAAAAAGCACGAAAAGACACATAATAAGATTGAAAAGGCATTACggaaatgtaatatttgtaatcaattttttcctTCAAAATTAGCACGTATAAATCATGAAAGAAAATATCACACGGATGAAGtttatcaatgttttatttgttataaattgttttttcataaaactcAATTAACGCGTCATATTAAATTGCACATGAGCAATATGTCAGCTGAATGTCTACGATGTAAAGAACCGTTACTAAAAGTACCTATTTCAGTTAAGGAACTAAGAGCCATAactggaaataaaaaaaatgtatgtaacgTATGTTCTATCATCTTCTAA
Protein Sequence
MQYCHLLLTTVHQCRIKRGESRKFFETKFSKIKLRKKKLLLGKIAENDNKILKVSLERCDNQLFHNQQDIKEEIFEFEDSDITIEEDDFLKNIKQENNDVMIKPIQQIEQQNVHANNEEGFILSNSFNSKENDDSAICNDVKYEVDCIDNMVYSSIIEIEPVNLQLMLNDSESEEKKSYKCQLCKESFSTRRDLNKHQKIPKKILNMYYKSKNSQKFNEESNLKSHNKTPDQKMTFNCDYCNKVFTVKSNLTVHIRTHTGVKPYICNLCQRPFAQKQNLMCHMRTHTGYKPHTCRICKMTFGHKSLLNYHEWTHTGVKPFKCEICAIEFSRKSSLVFHQKHSHTGEKLFKCHDCDETFYRKTFLKNHMRVHNTVQLEECHICEKKYSHKSSLKRHLLTHAGEKMFECEMCKKSFYRKFSLLAHIKVHMTERPYECHLCRSKFPTASELESHEKSHTIDEPFQCQLCDSSFTLQSLLDMHMRSHAGDRPYQCPHCLVTYAQKKSYSYHLKTHRDHKLYRCDICNATFFQKNKLIDHMRLHTGTKPYKCPVCNNRFTQKDVLHSHMRTHSVEDKYKCDICGVFFTQKSNLIKHIKEHPAFKSNFNCRFCKTKFVQKSTFMCHMKIHSENNSYKCSICGISFLLKTDMKKHEKTHNKIEKALRKCNICNQFFPSKLARINHERKYHTDEVYQCFICYKLFFHKTQLTRHIKLHMSNMSAECLRCKEPLLKVPISVKELRAITGNKKNVCNVCSIIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-