Msac004176.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- -
- Assembly
- GCA_002803265.2
- Location
- NW:2296777-2297272[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-10 1.9e-07 30.0 0.2 4 38 21 55 19 61 0.94 2 2 0.97 7.5e+02 -0.6 0.1 13 21 62 70 60 70 0.86
Sequence Information
- Coding Sequence
- ATGCCAAAAGTATATAAGCCAGATCCACGCGGCAAGCGTTATCAAAAACCTAACAAATCTGATTTAGCTAATGCTGTTGCTGCTGTCAAACTCAAGAAAATGTCCTACAGAGAAGCCGAGTCAGTTTACGGTATCAATCATTCAGTTATTTACAGACATGTTAAAAATCCGGAGATCAAAACACAAGGAGGCCAAACATCACTTTCTAAAGAAGAAGAGAATTTAATTGTATCAGGTATTTTGTTATGCGCTGAATGGGGTTATCCGTTTGGCAGATTCGATTGTTGTTttgtaagtttatataattaa
- Protein Sequence
- MPKVYKPDPRGKRYQKPNKSDLANAVAAVKLKKMSYREAESVYGINHSVIYRHVKNPEIKTQGGQTSLSKEEENLIVSGILLCAEWGYPFGRFDCCFVSLYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00940368; iTF_01347003;
- 90% Identity
- iTF_00940368; iTF_01347003;
- 80% Identity
- -