Msac004574.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- -
- Assembly
- GCA_002803265.2
- Location
- NW:1156483-1159091[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-11 2.7e-08 32.8 0.0 6 44 23 61 18 62 0.90
Sequence Information
- Coding Sequence
- AtggttcgcgtgtacaaaaaaaaagtgggTAGTCGCCCATATGCTAATAGGAGTGATGAAGTTGTGGAAGAAGCTCTTCAAAAAGTTGCTGATGGGGaactttcaattttaaaagctagtaaaatgtataaaattccGTATGGCACATTATACAATCGTTTTAATGGGAAACATGGCAAAAAACCTGGAGGACAGGCAATATTTAGTGATGAGGATGAAAAAACTATGATAGCTGCTGTATCAAAGTGTGGTGATTGGGGATTCCCTTTAACTTTAATGGATTTAAGATTAATCGCAAAAACATCATTAGACAAAAGAGGAATAATAGTTCAAACATTTAAGGATAACCTTCCAGGTGATGATTGGGCAAGGAGTTTGTTAAAAAGACACAATACACTAACTCAAAGAATCACAACAAACATTTCTCGATGTCGCGCCGAAGTCTCCCCtgctacaataaatttatattttgataatttgtcTTCAGTATTAAAAGATATACCTgctgataatattttcaattatgatGAGACCAACCTCCAGGATGAtccaggtaaaaaaaaatttttgttcaagCGTGGTACAAAATATCCTGTACAAGTTCAAAACCACTCTAAAAGTGCCACCACAATAATGGTATGTGGGTCAGCAAGTGGTATTCTATTACTACCATAcatcatttataaatcaaaaaatttgtgGGAGTCTTGGACAAATGAAGGACCCAAAGGATCTCCATGCTGTGAGAGTCCTTGCTGCTCAAAAGGAACCAGGTATAATTGTACACCACACGGATGGATGGATGGTATTACTTTCAAAGAATGGTTTTTCACTTTATTTTTGCCACATGCAAACCGTTTGACTGGGCGCAAAGTATTGATAGGAGACAATTTAGCATCTCATTTCAATCCGGAAGTAATACAACAGTGTGAGGATTCTGGTATTGATTTTGTGTGTTTACCTAAAAATGCAACACATTTAACTCAACCACTAGATGTGTGTTTTTTCCGGCCTTTAAAACAAAGTTGGAGATTTTGTTTAAACGAATGGAAAAATCGTAATACAAAGATGCAATCTATTCCGAAGTCATCTTTTCCAGCGTTGGTAAGTAGTTGTCTTCAACGAATCAATGATGTAGGAAGCATATCAAGCAATTTAGAATCTGCATTTCGTGCCACTGGAATTTTTCCATTAGATCGTAAtgctatattacaaaaattaccaAAAGAAGATTACcctaatattaatgatattgttgtaaattatttaaaagataaaagatttgaaaaaacagataaaaacagaaaaagaaaaaaaattaatattgctcCAGGACAGAGTGTGACTTCGGCCATTTTAAACACAGATAGTGATGATGATGCAGTTATTCCATACATTAACACAGATTCTGAAAATGAGGTAGAAAATGAAGATGTGATTCCAGATTATCAAACACCAAccaaagataatttaaaaattggtgATTTTGTATTGGTCAATGTTCAGTTAGGAAAACGAAAAAAgactatttatgtatatgcaGCTGTTATTAAgagtattgttaataatatatatacactaaatGGTCTTAAATCATTAGATGACATTAAAcagattttcaaaattcaagaTGATGATGTATTTGATgttgatataatacatattattgcaattttaaaaacacctAAACTGACAAAAGatgcaaattatatatttttacagccACTCTCTGATGTCAGAGAGGCATAG
- Protein Sequence
- MVRVYKKKVGSRPYANRSDEVVEEALQKVADGELSILKASKMYKIPYGTLYNRFNGKHGKKPGGQAIFSDEDEKTMIAAVSKCGDWGFPLTLMDLRLIAKTSLDKRGIIVQTFKDNLPGDDWARSLLKRHNTLTQRITTNISRCRAEVSPATINLYFDNLSSVLKDIPADNIFNYDETNLQDDPGKKKFLFKRGTKYPVQVQNHSKSATTIMVCGSASGILLLPYIIYKSKNLWESWTNEGPKGSPCCESPCCSKGTRYNCTPHGWMDGITFKEWFFTLFLPHANRLTGRKVLIGDNLASHFNPEVIQQCEDSGIDFVCLPKNATHLTQPLDVCFFRPLKQSWRFCLNEWKNRNTKMQSIPKSSFPALVSSCLQRINDVGSISSNLESAFRATGIFPLDRNAILQKLPKEDYPNINDIVVNYLKDKRFEKTDKNRKRKKINIAPGQSVTSAILNTDSDDDAVIPYINTDSENEVENEDVIPDYQTPTKDNLKIGDFVLVNVQLGKRKKTIYVYAAVIKSIVNNIYTLNGLKSLDDIKQIFKIQDDDVFDVDIIHIIAILKTPKLTKDANYIFLQPLSDVREA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134167;
- 90% Identity
- iTF_00972968;
- 80% Identity
- -