Mpla016983.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- ush
- Assembly
- GCA_963662105.1
- Location
- OY759210.1:29614092-29626915[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.021 2 9.9 0.0 1 20 318 337 318 339 0.89 2 9 0.0012 0.11 13.8 0.4 1 23 392 414 392 414 0.98 3 9 0.1 10 7.6 1.0 2 21 443 462 443 463 0.92 4 9 0.075 7.2 8.1 2.9 2 21 881 900 880 901 0.93 5 9 0.014 1.3 10.4 0.0 3 21 947 965 945 966 0.91 6 9 1.1 1.1e+02 4.4 0.2 1 23 1047 1069 1047 1069 0.72 7 9 0.022 2.1 9.8 1.3 1 23 1075 1097 1075 1097 0.99 8 9 0.00047 0.045 15.0 0.6 1 23 1160 1183 1160 1183 0.96 9 9 0.97 93 4.6 0.2 2 20 1334 1352 1333 1354 0.91
Sequence Information
- Coding Sequence
- ATGGCACCACACTGGCTCTGGCCAAAGAAGCGAAATAACTCGGAGTCATTCTGGATTCTAAGCTATCATGGAAGAGGAACGTGGATGAAAGAGCTAGAAAGGCTTTTAGCGCTTTGTATACGTGGAACAGAACATTTGGGAAAAATGGGGTGCAAAACCGTACATGATTCCAAAGATATAAATCCCAGCGATTTATCCGATGATCAAAATCATCACACTCAAGAGCACGAAGTGCACCCACATCATCAATCCTTATCTTCTCCGCCTGAAACCAATCCCACCAATGAGACTGATGTTGAAATGACTGAAAGTCCTGAAGCGGAAGCGTTACACACTTCACCAATGCATACTGATCGAACGTCACCTTTGGCATACCTGAGAATGTCATATGAGACAACAACATCAAATCGACCACCCAGTGTCACCACTGTTGTGAGATCTACATCCTCTGCTTCATCTCAACAGGATGCACCTACGACTTCCAATTCACCGACGAATGCGAACAATATGGAAGCAGATGATAATCATAATGACTTAAATGACTTTAGAACAAAGATAGAATATGACGATGATACGTCGTCACAACAGCAACGTGCAACTCCAGCAACACCTCAAAGTCCGTTTGCAACATTGGAAACAGAAACAGAAGAAGAATTATCCAATGCAATGAAAATTGCATCTTCACCATCAAGTATTTTGCCAAAATTGCGTTTAAATGCCCTATTAGCATCTGATCCGGCATTAAAGCCGGATGCCAAAGATTTAAAAGCAATGCATGAGGAGACGCAACAAACGAAGAAACGATCTGCCATGCATCAcataccaccaccaccaccaacgTTAAGTAAAAAAGAAGCATTAGATGGCGCTTCTGGTAGCTTGGTCGAATCATCACCTAAACAAACATCAACTACAGCTGCCGCCGCCGATTTGCCACCAAGATTAAAAGTATTCATGTGTATGCCATGTGGCATTGGTTTTAGTTCGCCTTCAACGCTTGAGGCACATCAAGCCTACTATTGCTCGCATCGTAGCAAAGAAGTTGATGACGAAAATGCGGCCCAACATTCTATCGGTTCCGAAAAAGCTTCTGGTTCGCCTACGGGTACATCTGCAACTGCTGCTGGTGCAACTGGAGAACCCACAACGAAGTCTCTAAGAACTGGCAAGCAATACGCTTGTGCCCAATGTTCGTATAGCGCGGATAAGAAGGTCTCCTTAAATCGTCATATGCGTATGCATCAATCATCACCAGCACCCAGTTCGAATGCATCCAATGGTGCTGGTGGTGGTATGGAAGAAACTACTAGTCAACAAATTGATCGTTACTGCAGCGAATGTGATATCAGATTCAACAATGTTAAGACTTATCGTGCTCACAAACAGCACTACTGTAGCTCCAGACGCACGGACGGTCAACTGACACCAAAGCTGGAAGTTACTACAACAACTGCGTCCAAAACAGCTGGTGGCAGCGGTGGTTCTGTTAGTCCTCAAACACGAACTAAAACACCAAATCCAGCAATGGTTGTTGCTGCAGCTGCAGCAgccgcagcagcagctgctACGTTACAAGCTCCACCACAACCATTTTTGGCGCTACCAACGAATCCTATACTAATCATTCCTTATTCACTAATACGTGCTGCCAGCTTAATACCAGGACCATTAACTACGGCCTCATCGGGTATTGTTAATCCTGAAAATACCTGCTTCACACTTGATAATGGTGCGCTTAAGCCACTAGCTACTGCTTTGAGTATGGGCGCCAGCACAACAAGTTCAGCAACGGTCGCAAAAACCGCTGGTAACATCAACTCCAATAGTATTAGCAGTGCCAACAGTGGCAATGGGCATCAAATTCCAATAATAGACTCTACACGTCAGCAACAGCATGGTAGTGCTGAGTCAATGATATCGCTACTAACAGAGAAGAATGCGGGACGCAATGCCGAGACAGTTGAGAGTACGCCAAAGCGCAACGAGTGTGTCATACGagaGACCACAACACCTTTGGATCTCTCATTGACACGTCGCTCTCCACTCGCCGCTGTGCTACAGCGCCAACGTATGCGCTcggcttcaacatttttcgatagcGAACAACAGCGTCTCGATATGGACACCCTACTTGAGGCGAGTAAGGAAAATCTGTCAATGGACGATAGTGGCAGTATAACACCGGAACAAATCGTCTGTGCGCCATCACTGCCCAACAGTCCCTCGATGAGTCCTTCGCCAAAAAGACGTGCCATAAGTCCGCGCAGCTGCGGTGCTGGTAGCACTTCTTCCATGTCTCCGCCAGTTAGTACCGCAAGCACAACAGCCGCCTTAGcagccgctgctgctgctggcaaTATGTTAGATCATTTACCATTACGTTCGATGCTACCAACCGATATTGCATTGAAACTATCAGAATCGAATATAATGAATCCATTGTTGGCCAAACATAATCTGGAATTAGCGTTGAAATTGTCTGCCGCTGCAGCTGCAACAGCTATTGCCGCTGCAACCGGCAAATCCTCTGCGTTGGGCATGTCTGTGCTACCACCTAGTGGGGGTGCTGGTAGCGTTGGCACTGCTTCCACTACCAGTGCTGCTAGTCAGCCTCAAATTTACGTGAAACAAGGTGTTTCTAAATGCAAAGAATGCAATAttgtattttgtaaatatgaaaACTATTTGGCACATAAGCAACACTATTGTTCGTCACGTAATCAGGATGTTGGCGGCAGTGGTGGTGACGGTGGAGATTCTAAGTTAAGTGGCACACCACCGATGGCAGCCGGACCTACTACAGCCGATACTACGCCAATGGCATATCAGCAGTTGATCTGCGCTGCATGTGGCATAAAATATACTTCGTTGGATAACTTACGCGCCCATCAGAATTACTATTGTCCAaaaggtggtggtggtgttgctGCAGCAGCTGCCGCTGCCGCTGCGGCTGCAGCAACGGCGGCTGATGCCACGCAGCACTcactttcaaaagaaaaatgttccaAATGTAAGACCACACATGAAATAGGGCTTCCTTGCCCACCACCACCagcactacaacaacaacaagcatcACATCATATACACGGCTCATCAACTTCCGTAGCGAATGCCTCCTCAAATCATAATGTCTACAAATGTCCTGTCTGTGACGTGGTCAGTTTGACTGTCAGCGATAGTCGCAAACATTTGGAGACACATGGTGGTGTTAAGGCATTTCGTTGTTCGATATGCCGTTATAAAGGCAATACGTTAcgtgGTATGAGAACACATATACGTATGCATTTTGATAAGAAAACGACTGATTTTAATGAGGAGCACTACATGTCCTGTATATTAGAGGATGATGGCTTAGAAATTCCAAGTGTAGCCACAATGAGCCAAGAACAATTGGTGCAACAATTAGCTGcagtacaacaacagcagcaattacaacagcagcaacaattacaacaacaactgcaacaagTATTCAATTGCGATATATGCAATTACTCTTCTTCATATAAAGGAAATGTGttgCGTCATATGAAACTTGTACATCCGCATGCTATTATCAACTCACCATCGATTTCACCAGAGTCAGGCGACTGCGAAGCAGATGCTACATCATTATCGAATAGTTTCAATGGAGCTGGAGATAATAATAGCCATagCTTTTCCATAAAAACGGAACCTATGGATAATTCCAACATAAAAGCACCGCTATTACCAACAGCTCCAATACGCTCCATATCATCACTTGGCAATTTACATGAGAATAACAACTCTCCTATACCAATAACAGCCACTAATGCTGGCACAAATCATTTTATGACATACATTAAATCTGAACCTATGGATATATCTATAGAAACCACGCAACATTCAGCACAACCGCCGCCGCCACCAGCACAATCACAGAACTCACCGTCAATGATTGGGCCACCACCACCATTAAATGCTACGTCTGATGAGAACAGTACAACTGTTGCTGCGCCCATGaatcaaaaatattgtgaaGTCTGCGATATACCATTTAACTATATGAAAACATATCTGGCGCATAAACAATTttactgtaaaaataaaacgcTACGTCCCGAGGCAGCAACACATCGTGACAGTCCTAGCCCGAATGCAGCAGTATTGCCAACAGGCCTGCACTCACCAAACGTGGCTGCCATGTTATTGCAAAAGAATAAGGAGAATCTGCAACAGGAGGCAGCCATTTGA
- Protein Sequence
- MAPHWLWPKKRNNSESFWILSYHGRGTWMKELERLLALCIRGTEHLGKMGCKTVHDSKDINPSDLSDDQNHHTQEHEVHPHHQSLSSPPETNPTNETDVEMTESPEAEALHTSPMHTDRTSPLAYLRMSYETTTSNRPPSVTTVVRSTSSASSQQDAPTTSNSPTNANNMEADDNHNDLNDFRTKIEYDDDTSSQQQRATPATPQSPFATLETETEEELSNAMKIASSPSSILPKLRLNALLASDPALKPDAKDLKAMHEETQQTKKRSAMHHIPPPPPTLSKKEALDGASGSLVESSPKQTSTTAAAADLPPRLKVFMCMPCGIGFSSPSTLEAHQAYYCSHRSKEVDDENAAQHSIGSEKASGSPTGTSATAAGATGEPTTKSLRTGKQYACAQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGAGGGMEETTSQQIDRYCSECDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLEVTTTTASKTAGGSGGSVSPQTRTKTPNPAMVVAAAAAAAAAAATLQAPPQPFLALPTNPILIIPYSLIRAASLIPGPLTTASSGIVNPENTCFTLDNGALKPLATALSMGASTTSSATVAKTAGNINSNSISSANSGNGHQIPIIDSTRQQQHGSAESMISLLTEKNAGRNAETVESTPKRNECVIRETTTPLDLSLTRRSPLAAVLQRQRMRSASTFFDSEQQRLDMDTLLEASKENLSMDDSGSITPEQIVCAPSLPNSPSMSPSPKRRAISPRSCGAGSTSSMSPPVSTASTTAALAAAAAAGNMLDHLPLRSMLPTDIALKLSESNIMNPLLAKHNLELALKLSAAAAATAIAAATGKSSALGMSVLPPSGGAGSVGTASTTSAASQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSSRNQDVGGSGGDGGDSKLSGTPPMAAGPTTADTTPMAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGGVAAAAAAAAAAAATAADATQHSLSKEKCSKCKTTHEIGLPCPPPPALQQQQASHHIHGSSTSVANASSNHNVYKCPVCDVVSLTVSDSRKHLETHGGVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTTDFNEEHYMSCILEDDGLEIPSVATMSQEQLVQQLAAVQQQQQLQQQQQLQQQLQQVFNCDICNYSSSYKGNVLRHMKLVHPHAIINSPSISPESGDCEADATSLSNSFNGAGDNNSHSFSIKTEPMDNSNIKAPLLPTAPIRSISSLGNLHENNNSPIPITATNAGTNHFMTYIKSEPMDISIETTQHSAQPPPPPAQSQNSPSMIGPPPPLNATSDENSTTVAAPMNQKYCEVCDIPFNYMKTYLAHKQFYCKNKTLRPEAATHRDSPSPNAAVLPTGLHSPNVAAMLLQKNKENLQQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258447;
- 90% Identity
- iTF_01486708;
- 80% Identity
- -