Mpla010316.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- Sry-delta_3
- Assembly
- GCA_963662105.1
- Location
- OY759209.1:28179028-28180371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00055 0.053 14.8 1.8 2 23 175 197 174 197 0.94 2 8 0.091 8.8 7.8 1.5 1 23 200 222 200 222 0.98 3 8 0.00036 0.035 15.4 1.5 2 23 229 250 228 250 0.97 4 8 0.0037 0.35 12.2 3.1 1 23 256 278 256 278 0.96 5 8 2.1e-05 0.002 19.2 3.8 2 23 286 307 285 307 0.97 6 8 1.9e-06 0.00018 22.6 3.6 1 23 314 336 314 336 0.99 7 8 5.2e-05 0.005 18.0 2.4 1 23 372 395 372 395 0.92 8 8 0.13 12 7.3 0.4 2 21 420 439 419 442 0.82
Sequence Information
- Coding Sequence
- ATGGCACAGCTTTCAAGTGATCAAATAAGGTGCTTTTTATGCCGTCGAATAAATGCAAGCAGCAAAGTGCATAAGAAAATTCAGACAACTATCTGCCCAGTTTCGAAAAAAACGCTGAACGATGTCCTGCAACACTTGGCCCGAAGTGCGCGCACAGAACTACATATTCCCAAGACTGAATGCGTTTGCTATAATTGTCACTGCCAGTTAGTGGAGTTTGATGGCATAATGGTAAAATTACTGCGTACACAAAAAAGTCTTACAAAACTTGTTGAAAATGCTGCCGCCGGTGTAGATTCCGATATGGAGGATGAATGCAACGCCCATATATCTACTATGGATGAGTTCAACGACGACGACTTCTTCGGCGATTTGGATGTTTCTGACAGTGAAATTGCACAAACCGTAGACGACGCAATGCACGAATCAaaagaaagctttaaaaatcACGGAGAACAAATGCAACTAGAAGAACTTCGCTCAGAGCATTTGCATAAACATAAACAAGATAAGCAGCAGCTGCAGTGTCAATTCTGTgttatgaaattcaaaaataaaaccaagCTTCAAAGACACATTAGCCAAGCACACAAAAAGTTCACTTGTGAAATGTGCGACTTCAGTCACAGAAATGAAGATTATGTTATGTTACACATGAATCTGCATGAGGACCGACCTGAAAATCAATGCCGTTTCTGTGATAAACAATTCACAACTAAAATTAGTACTATTCGTCACATGGAAGTGCATATGAATTCGAAAAAATACATGTGCGACAAATGTGGCCTCTGCTTCTCACAAACGACTGTACTCTACAATCACAAGCTTCAGCATGAAGCTGAAGAAGAGCCTCTGAGGTGCGAGatttgcaatcaaatttttaagaCTAAGCGTACTTTTCGTCATCACATGATTACGCATCAAGCCGATAGACCACGATATAGTTGCGAGTATTGctcaaaaacttttacagaaaaatataCTCTTAAAGTACACAAACGAACACACGCAGTGTCCATTGATAATCCAGAACAACAATCAGCTGCTTCGAATGAAGTTGAGGAAATACCAACAACAACGGCAGTAGTAGCACAACCCTCTGAAGGTACCAAATTCAATTGCATTATTTGTTCACAGACTTTTTCCAGCAAGGATCACCTTAATAAGCATATGGAAAAGGAACATGATGTTATACTTAAATCACTTACTTTAACAAACTTTTCCCAGTACGATGTTGTTACCAATGAACCGAAAAAACCGTGTTATATTTGCGGCCACATGTTTAGTGCACAAACTAATTTGGATTTTCATTTGGAAAATGTACATGGTGTTTCATGTAAATAG
- Protein Sequence
- MAQLSSDQIRCFLCRRINASSKVHKKIQTTICPVSKKTLNDVLQHLARSARTELHIPKTECVCYNCHCQLVEFDGIMVKLLRTQKSLTKLVENAAAGVDSDMEDECNAHISTMDEFNDDDFFGDLDVSDSEIAQTVDDAMHESKESFKNHGEQMQLEELRSEHLHKHKQDKQQLQCQFCVMKFKNKTKLQRHISQAHKKFTCEMCDFSHRNEDYVMLHMNLHEDRPENQCRFCDKQFTTKISTIRHMEVHMNSKKYMCDKCGLCFSQTTVLYNHKLQHEAEEEPLRCEICNQIFKTKRTFRHHMITHQADRPRYSCEYCSKTFTEKYTLKVHKRTHAVSIDNPEQQSAASNEVEEIPTTTAVVAQPSEGTKFNCIICSQTFSSKDHLNKHMEKEHDVILKSLTLTNFSQYDVVTNEPKKPCYICGHMFSAQTNLDFHLENVHGVSCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258395;
- 90% Identity
- iTF_01486701; iTF_00258395;
- 80% Identity
- -