Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759208.1:179363-184930[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.014 1.4 10.3 1.6 3 23 352 372 351 372 0.95

2 8 0.00053 0.051 14.8 0.6 6 23 382 399 380 399 0.96

3 8 0.00021 0.02 16.1 2.3 1 23 407 429 407 429 0.98

4 8 0.0077 0.74 11.2 1.2 1 17 437 453 437 454 0.95

5 8 9.7e-07 9.3e-05 23.5 0.5 2 23 458 479 457 479 0.97

6 8 0.001 0.098 14.0 2.3 1 23 485 507 485 507 0.97

7 8 0.14 13 7.2 0.2 1 17 512 528 512 529 0.90

8 8 5.8e-06 0.00056 21.0 0.1 2 23 540 562 539 562 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.014	1.4	10.3	1.6	3	23	352	372	351	372	0.95
2	8	0.00053	0.051	14.8	0.6	6	23	382	399	380	399	0.96
3	8	0.00021	0.02	16.1	2.3	1	23	407	429	407	429	0.98
4	8	0.0077	0.74	11.2	1.2	1	17	437	453	437	454	0.95
5	8	9.7e-07	9.3e-05	23.5	0.5	2	23	458	479	457	479	0.97
6	8	0.001	0.098	14.0	2.3	1	23	485	507	485	507	0.97
7	8	0.14	13	7.2	0.2	1	17	512	528	512	529	0.90
8	8	5.8e-06	0.00056	21.0	0.1	2	23	540	562	539	562	0.92

Sequence Information

Coding Sequence: ATGGATATACTATGCAATAAACTTAATAAATGTCGTGCATGTCTTGTGGAAAACAACTCTCAGTTATTGTGTTGGACTGCACCAATGGAAACTGCTAACTATGAAAGCATAACATATATGGAATGTTTTCAAACGTGCACTCGATTGGATGTCCACGTACATGATCAGCTACCACAGACGCTATGTTTTCAATGTGCGGCTGAACTGCACGATGcatatgaattcataaaaaaagcaACACAAGCTCATCAAACACTTCTAATGAAACAGGAACATTTCACAAAAACTGATGAAGACAGGCAAGAAGAAATATCAGGTTTTGAATGGGTGGCGGTGCAAAAAACGGCTGATGACCAAAAGGCCACCACAGACGCTTTCACTGGTACAACGTTTAAGACATCCAGTACAGTAGAGCTTACAATAAATGTAGACGCAAATACTGTTAAAGATTATGACTCTGCATCTATGGATAAAATTGACTGCAGCTCTATATCAGGGAAAAAAGGCGATAGCGATCACAGCTTTGATCCTAAAAAAGAGTCAGCACGTGTCAAATGTGTCTCAAAAAGACTACGTAAACAACCGAATTCGAATGTAAAATCGTTGGACAAAGTTGAATGCAGCTCTACTTGTACATCAACGGAGAACAATGAGAGCGATTCTAGTTATGTACCTGAAGAAGAACCGGTACGCCGTgtcaaatttagtaaaaaaagaaaacatcaaGAACTTAAATTGATGATAAAATCAAATGGGATGGAAAGGCTGCTCTGCCATGTATGCCTTGATGCTTGTGACTCCGCATCGGATGACAACTTCGACTGCAGTCCTACATCACCACATGATGACGAAAGCGATGCTAGCTATATACCcgaaaaagaaatcaaaattaaatccaaaaatgAGACTGCAAAAGTGTCCGATCGCAATGTCAAACCTGCTACAAAAAGAAAACGTAGAAAACAATGGATCAGTGATGCGGATAAAACAGAAATAACAGATGAACAGGAAGAACTGGAGGAACAAGATCAACAAAGTCAAGCCGATGTTGATTGCGAGTTTTGTAATAAACCATTTTCGCGAAAGAAAATAAAGCGACATATAAAACGTGTTCACAATGTGAGAATGCTGCTCCGTCATGCATGTCCACGTACCTTTAAAGATGCCAGCAATTTGACACAACACTCCCTAACACATGATGAAAACCGGCAACGCAATTTCACTTGCGAACAATGTGGTAGAAAGTTTTTTACCAGAACTGCATTCCTTAATCACGGTAAAACTCATGAGACTAATCGTCAAGCAGAATATCAATGTGAGAATTGTGATAAGCAATTTTTCCATAAAGGCAGTTTGAAATTGCAAACTCTGGAAtgtaaaatttgtgaaaaaagatATCCGCGTAAAATTGATTTAAGAATCCACATGAGAACCCATTCGGGAGATATGCCATATAAGTGTCGGTATTGTGAGCGAGCATTTACACGGGTTGGTGTTCTTAATAAACACGAGCAGCATCATGAAGGTTTTCGCTATAAATGTGAAATTTGTGAAAAGGAGTATTTGAATCAATCAAGTTTGATAAAACTCAGGAAAGAGCACACAGGCATGCCTCTGAAGTGTCTGATATGTGGCAAGGGATTTGTCACAAAATCCAaTATAAAACGACACATTGAGGgtgtacataaaattaaaaatccagaAGAAATGGAAGAGTTTATACTTAAGGTTAAGACAAAAAAGGAATATCGAGGTCGTGTGGTATAG
Protein Sequence: MDILCNKLNKCRACLVENNSQLLCWTAPMETANYESITYMECFQTCTRLDVHVHDQLPQTLCFQCAAELHDAYEFIKKATQAHQTLLMKQEHFTKTDEDRQEEISGFEWVAVQKTADDQKATTDAFTGTTFKTSSTVELTINVDANTVKDYDSASMDKIDCSSISGKKGDSDHSFDPKKESARVKCVSKRLRKQPNSNVKSLDKVECSSTCTSTENNESDSSYVPEEEPVRRVKFSKKRKHQELKLMIKSNGMERLLCHVCLDACDSASDDNFDCSPTSPHDDESDASYIPEKEIKIKSKNETAKVSDRNVKPATKRKRRKQWISDADKTEITDEQEELEEQDQQSQADVDCEFCNKPFSRKKIKRHIKRVHNVRMLLRHACPRTFKDASNLTQHSLTHDENRQRNFTCEQCGRKFFTRTAFLNHGKTHETNRQAEYQCENCDKQFFHKGSLKLQTLECKICEKRYPRKIDLRIHMRTHSGDMPYKCRYCERAFTRVGVLNKHEQHHEGFRYKCEICEKEYLNQSSLIKLRKEHTGMPLKCLICGKGFVTKSNIKRHIEGVHKIKNPEEMEEFILKVKTKKEYRGRVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -