Mpla002112.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Meiosimyza platycephala
Gene Symbol
-
Assembly
GCA_963662105.1
Location
OY759208.1:34135755-34149196[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.061 5.8 8.4 3.0 2 23 203 225 202 226 0.95
2 16 3.2e-06 0.00031 21.8 1.2 1 23 257 280 257 280 0.98
3 16 0.00022 0.021 16.1 0.3 1 23 288 311 288 311 0.97
4 16 2.1 2e+02 3.5 5.5 1 21 316 336 316 339 0.94
5 16 0.00022 0.021 16.0 1.9 1 23 345 367 345 367 0.94
6 16 9.2 8.8e+02 1.5 0.4 2 17 376 391 375 398 0.63
7 16 0.015 1.4 10.3 3.7 2 17 405 420 404 421 0.93
8 16 7.8e-05 0.0075 17.5 2.1 1 23 450 473 450 473 0.97
9 16 0.0044 0.43 11.9 3.1 2 23 602 624 601 624 0.95
10 16 0.0026 0.25 12.7 0.5 1 23 632 654 632 654 0.97
11 16 0.00045 0.043 15.1 1.4 2 23 662 684 662 684 0.96
12 16 2.3 2.2e+02 3.4 1.3 3 22 692 711 690 713 0.75
13 16 0.026 2.5 9.5 1.0 2 23 722 743 722 743 0.97
14 16 0.079 7.6 8.0 0.9 1 23 752 774 752 775 0.94
15 16 0.00018 0.017 16.4 0.8 1 23 780 802 780 802 0.98
16 16 0.23 22 6.5 9.1 1 23 808 831 808 831 0.97

Sequence Information

Coding Sequence
ATGATTTGTCGCCTTTgcttaataaatattaaagtagAAAATAAAGTTTCTCTGTTCAATGAGAAGGAAAGTGGtgatgaattaaaaataataaaattaattgcaaagtATTTGTTCTTAGAGATAACACAAAATGATGCATTATCTACAACCATCTGTCAGGAATGTAATAATCATTTGAATgaatttaatacattttgtaTACACGTCGAGCGACAACAAAGCACTCTGCTAAATGAGTTCCTGGCCATAAAATGCGATATGCAATTAGATTTGGACGGGGTCGAAATTCCAGTTGAGAGTGAAATTGATGAATCACAGCTGGATATCGAAGATGTACTAGTAGACTCATTGAAGGCAAAATTCGATGAATATTCTCCTGGAGCCGATGATACAGATCGTTTTGAATCTGTTGATGATTCTGATTACGaTGATgtacaatttcaaaattttgcaccAGGAGCAAATGAAATGGATTATGAAAGCGGCGAACTATTATATGAAAAAGTAACAGATACAACTTCAGTACAACAACCACGTgttgaaaagagaaaaattcCGGACACTAAAAGAAAGgatgaatttattgcaaagtACATGCAATTGAAATGTGAACTATGTCAGCAGCCTTTAAATACATTTAAGGACTTACGCAGACATTTCAAGAAAATTCACCATCGTAAACAATATGTCATATGTTGTGGAAATCGCATATATGATCAAAATAATCTTTATGGTCACATTCAATGGCACTTAAACCCGGAACATTTCAAATGCGGAGAATGTGATAAACTGTTTAAAACCAATAGCAGCCTAAGTGGTCATATTAGAACAAAACATTATAAGCCTGaagatttaatttataaatgtaATTTATGTGATATGATTTTTCCACTCAAAGGTTCGTTAAACCTTCACATTAAAAACCAACACGCTAAGAAGACTTTTATTTGTGAACATTGTAACGACAGTTTTATAAACCAATGTCGGTTGGACAAACACATAAAATGTGTACATGATAATTTTTTCCCGCATGTTTGTGATATTTGTggcaaaaaattcaaacataaaCCATCTTTTGATGCACATGTACTTGATCATAAAGGCATAGTACAACCTCCAAAGCAATGTAAGATATGTGGTGAATGGAAAAAGACTACTAGGGCAGTTCAGAGACATATTGAATATAGGCATCGGAATTCTCCCATCTGGAAATGTAAATACTGCGATAgacattttaaatcaaaatgcaacTTGAAGGtacttttgtatttaaaaaagtttgatttacatgaaaaatatttaattttcaaggaGCATGAGGCAAAACACACTGGAGATTATTTGTACAACTGTCCGTATTGTGTTAAAGAATTTCGGTCTCACTCcaacatgtatgtacatattaaggTTAAACATGCGGAGGAAAGGTTAGCAGCGCAATCAGCACCAGATGGGCAAAGtgTTATTAGTCTGGCAAACACTGCACGACTTGTGATTCAACAGTCCGTGGATGATTCTATTCGTAAGCTGTTTCCAATAACTTCTGAAGAAAAGTTGGTAGAAATTGATAGAAAAATTATACCAGAAAATCGAGATCAATATAATTTAGTGGCGGATTTATCAAATGGCCAAGATGAAGATGTCAAGAATGTGCCATTGTATGAGCAGCCAATTGATACAGTATCCCACGTACAGTCAGAGTTAAAAGCTGAGGAGTTCGCTGCAGCCAGTACTGATGATGCGGTCAGTGTGAATGAAGATATGCATATATCAGATGGTATGTTATTACATATTGAATGTGTATGCAAAGAATGTGATAGGGTATTGGCTAACATTGTATCCCTTAAAAAGCATATGTACAGATGTCATCCATCAGAAGAAGCATTGAAGTATTCATGCAGCTTGTGTGTAAAAAAATTCGCTAAGAAATACCTGTTAGATGACCATCTACTTTGGCATCGTAAGGTAAAAAACAAGAACACTTGCGAGATGTGCAAGCAAGGtttttactcCAAGCGAGAACTAAAAGCACATAGGAAAAGTGAGCATGCTAATGAACTCAAAATTATATGCGATAGTTGCGGTAGAAGCTTTAAGTGTAAGCTAGGATACGATAATCATTACAAAGCTGAACATTTAGGCATTACGCGGCCAGAAGAACAGtgtaaaatttgtggaaaatgGTTGAAGGATGATCGTAGTCTTTATAAGCATATGTATAAACATCGGGATGAAAATTCTGGCAAAGattttatatgtaatatatGTGGGGTTGTCAAACCAACTAAGCAAACACTTACAGCGCACAAAAGCTATCATCATCCAGATAAAATGCATAAATGTACGCTATGTAGTAAAGAATTCAAACGATTGCTAGCACTAGAGGAACACATGGCAGTGCACACTGGTCAGCCGTTATATTCATGTTGCTTTTGTCCGCAAACTTTTAAGTCTCATGCAAATATGCACACACACAAAAAGAGATTGCATCCAAACGAATGGGTGCCGAAAAACTCACAACCACGTAAAGTTGTAACTTCCACTGTAAATGAAGCTGTAATAGGTCAAGAAGATAACAAGAAAATTGTTCAAGACTTATAA
Protein Sequence
MICRLCLINIKVENKVSLFNEKESGDELKIIKLIAKYLFLEITQNDALSTTICQECNNHLNEFNTFCIHVERQQSTLLNEFLAIKCDMQLDLDGVEIPVESEIDESQLDIEDVLVDSLKAKFDEYSPGADDTDRFESVDDSDYDDVQFQNFAPGANEMDYESGELLYEKVTDTTSVQQPRVEKRKIPDTKRKDEFIAKYMQLKCELCQQPLNTFKDLRRHFKKIHHRKQYVICCGNRIYDQNNLYGHIQWHLNPEHFKCGECDKLFKTNSSLSGHIRTKHYKPEDLIYKCNLCDMIFPLKGSLNLHIKNQHAKKTFICEHCNDSFINQCRLDKHIKCVHDNFFPHVCDICGKKFKHKPSFDAHVLDHKGIVQPPKQCKICGEWKKTTRAVQRHIEYRHRNSPIWKCKYCDRHFKSKCNLKVLLYLKKFDLHEKYLIFKEHEAKHTGDYLYNCPYCVKEFRSHSNMYVHIKVKHAEERLAAQSAPDGQSVISLANTARLVIQQSVDDSIRKLFPITSEEKLVEIDRKIIPENRDQYNLVADLSNGQDEDVKNVPLYEQPIDTVSHVQSELKAEEFAAASTDDAVSVNEDMHISDGMLLHIECVCKECDRVLANIVSLKKHMYRCHPSEEALKYSCSLCVKKFAKKYLLDDHLLWHRKVKNKNTCEMCKQGFYSKRELKAHRKSEHANELKIICDSCGRSFKCKLGYDNHYKAEHLGITRPEEQCKICGKWLKDDRSLYKHMYKHRDENSGKDFICNICGVVKPTKQTLTAHKSYHHPDKMHKCTLCSKEFKRLLALEEHMAVHTGQPLYSCCFCPQTFKSHANMHTHKKRLHPNEWVPKNSQPRKVVTSTVNEAVIGQEDNKKIVQDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-