Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: ZIPIC
Assembly: GCA_963662105.1
Location: OY759209.1:28155685-28163027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00038 0.037 15.3 1.4 2 23 225 247 225 247 0.97

2 7 0.00019 0.018 16.3 1.4 1 23 251 273 251 273 0.98

3 7 0.00012 0.012 16.8 1.6 1 23 279 301 279 301 0.97

4 7 3.2e-06 0.00031 21.8 2.2 1 23 307 329 307 329 0.98

5 7 2e-07 1.9e-05 25.6 2.1 2 23 336 357 335 357 0.97

6 7 3.1e-07 3e-05 25.0 1.1 1 23 363 385 363 385 0.97

7 7 0.016 1.5 10.2 2.4 2 19 397 414 396 416 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00038	0.037	15.3	1.4	2	23	225	247	225	247	0.97
2	7	0.00019	0.018	16.3	1.4	1	23	251	273	251	273	0.98
3	7	0.00012	0.012	16.8	1.6	1	23	279	301	279	301	0.97
4	7	3.2e-06	0.00031	21.8	2.2	1	23	307	329	307	329	0.98
5	7	2e-07	1.9e-05	25.6	2.1	2	23	336	357	335	357	0.97
6	7	3.1e-07	3e-05	25.0	1.1	1	23	363	385	363	385	0.97
7	7	0.016	1.5	10.2	2.4	2	19	397	414	396	416	0.96

Sequence Information

Coding Sequence: atgcattcttgttgcatttgcaaattttgctatgaaactgaaataaatattttcaaagaacGAATTGGTGATCCACCAGTAGCAATAACTGATCTTATCCATGAGTGCACCCAAGATTTTGTACAAGGCGAGGATGTTATTAATGAAATCAAACAGAATAACATTTGTGTAAAATGCACTGGTAAACTGCTGATTTACTACAAAGCCTCcttgatgatgaaaaaaattaaatttgatctAAGCAATTTAATGAGAAAAACAGAAACAAACAAGGAAGCGCAGCCAAATGAAGGTTGGTCACCCATAGAAGAAACACCAAATTTAACTACTGAAGATGGCGAAGGAGCAGCAACTGCAGGTGATGAGGTTGATATCGAATGTGATGATtacattaaaattgaatatgtaGATTACATGGATAGTTTCACAGATGCCGAGGACGAGTTTATTTTGGAGGATATGCCAGCTTTAATGAATTCCAAAATGTTGCAGGATTCAGACCTAAAAATAGAAGCAGGGAGCGAAAGTAGCAGTATATTTGCAGATGTTATTGAAATTGAACATATCAGTACAGCAGACGTAAGAGAAGTAAAAGAGGAAGAACATGTTCCAAACCGCTTACAACAAAGACAAAGGAAACGGATCAAGAATTCacaaaaaatgttcattgcCAAATGCACCGAATGTGATTTGGAGTTTGAAAGTAAGCAGAAATATAATGCACATCGACGCAAGGATCATTACGCAGGTTATATATGCGATACCTGtggcaaaacatttttttccactaCTGGATTTGAAAGCCATAAGCTCACGCATAGGGAAATTAAAGAATTCGTTTGCAATGTGTGTGGTCAGGCGTTTCATTTGAAAGTGTATCTGAAGCATCACATGGCTTGGCATACGGGTGAAATGAATTACCAGTGTGATGTGTGTGAAAAACGTTTTGTTCACAAAGTTGCCTTgcagaaacacaaaaaaatacatGATGATGTTCGAGAAATTACCTGTGAAATATGTGGATTCAAATTTCGGACAAGAGCGCATTTGAACAGACATATGCTAACGCATACTGGTGCCAAGCCGCACAGTTGTCCCATATGTGGCAAACGTTTTTCGCAAGTTTAcaatatgaaagtacatataCGAGAACACGAAAAACCTGGGAGTACGCGCAGGCACCGTGTAAAGTGCAACACATGTGCGAAGTCGTTTTCAAATCGGGCAACTTATGAACAGCATTGCAAAGCTAATATTTGTCAATACGTGGAATAA
Protein Sequence: MHSCCICKFCYETEINIFKERIGDPPVAITDLIHECTQDFVQGEDVINEIKQNNICVKCTGKLLIYYKASLMMKKIKFDLSNLMRKTETNKEAQPNEGWSPIEETPNLTTEDGEGAATAGDEVDIECDDYIKIEYVDYMDSFTDAEDEFILEDMPALMNSKMLQDSDLKIEAGSESSSIFADVIEIEHISTADVREVKEEEHVPNRLQQRQRKRIKNSQKMFIAKCTECDLEFESKQKYNAHRRKDHYAGYICDTCGKTFFSTTGFESHKLTHREIKEFVCNVCGQAFHLKVYLKHHMAWHTGEMNYQCDVCEKRFVHKVALQKHKKIHDDVREITCEICGFKFRTRAHLNRHMLTHTGAKPHSCPICGKRFSQVYNMKVHIREHEKPGSTRRHRVKCNTCAKSFSNRATYEQHCKANICQYVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01486580;
90% Identity: iTF_01486580;
80% Identity: -