Mpla002115.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Meiosimyza platycephala
Gene Symbol
-
Assembly
GCA_963662105.1
Location
OY759208.1:34162111-34168486[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00055 0.053 14.8 0.4 2 23 165 187 164 187 0.95
2 16 0.1 10 7.6 2.4 1 23 195 217 195 217 0.97
3 16 0.0004 0.038 15.3 2.6 3 23 225 246 224 246 0.96
4 16 0.0054 0.52 11.7 0.5 3 23 254 275 252 275 0.94
5 16 0.21 20 6.7 0.5 2 23 284 305 284 305 0.97
6 16 0.079 7.6 8.0 2.5 1 23 314 336 314 337 0.95
7 16 0.035 3.4 9.1 0.2 1 23 342 365 342 365 0.89
8 16 0.00046 0.044 15.0 2.3 1 23 371 394 371 394 0.97
9 16 0.00012 0.012 16.8 0.8 2 23 575 597 574 597 0.95
10 16 3.6e-05 0.0034 18.5 1.0 2 23 618 640 617 640 0.95
11 16 1.9 1.9e+02 3.6 0.5 9 23 647 662 645 662 0.91
12 16 0.0012 0.12 13.7 0.3 2 23 669 691 668 691 0.94
13 16 0.16 15 7.0 0.6 2 23 700 721 700 721 0.97
14 16 2 1.9e+02 3.6 2.8 1 23 730 753 730 753 0.90
15 16 0.0033 0.31 12.4 0.3 1 23 758 781 758 781 0.92
16 16 0.00019 0.018 16.3 2.8 1 23 787 810 787 810 0.98

Sequence Information

Coding Sequence
ATGGAAGATGTAGTATCTAGCAAAATTTGTAATACATGTTGGAAACATTTGGATGACTTTCATAGATTCTGGCTGTTCATTAAAGAAAAGCATCAAACATTTCAGGAGCTTGCTAAAGTTAAATGCGATCCTCTTGAAGACGATTTTAAAAAGGAGTCATCACATTGGGAAAAGGATGATGTAAAAGACGTGCAGTTGCATGAACTCTCAATTATTAATGAATCATCTTTTGTGAAGGCGGAGCTAAAATCTGAAGAATTCAAGGCAACCAATTTTAGCGAAGAAGTGAAATCAGACAAGGATGATCTTACATTGCATGATGAAACAGGTGATGATTCAGACTATCTAGCTAAAAGCGAACCGAGGCAATTGAAAGAAAGTAAACATGGGAAACGTTGTTTACcttacaaaagcaaaaatacaACCTCTGCTAAAAAGCAGCGAAAAGTTTTTACTGCGAAAAAACTGAAGACGGtcgaaaatacaaaattaatATGTGAAATATGTAATAAGGAGTCTGCAAACAAGAATGCACTTAAACAACATATGTACAGACGCCATCCAACGGAGCTTGAACTTAAGTACTCATGCTGTTTGTGTGTTAAAAAGTTCGccaaaaaatacatattagAGCAGCATTTAAATTGGCATCGTACAAGTAAAAGGAATATCTGTGAAACGTGTAAAAAAGGGTACTGTACCAAACAGGAACTAAAAGCGCACCAAAAAAGCGACCATGCTGACGTGTTCAAAATTATATGTGATAGTTGTGGTAAAGGCTTTAAAACAACAACAGGCTATTCCAATCATTATAAACAAGATCATCTGGGTACCACACGACCTGAAGCACAATGTGAAATCTGCAAAGAGTGGTTAAAAAATGACAGTAGTTTGTTACAGCATATGTACAAACATCGAGATGAAAGTTCAGGGAAagattttgtttgcaaaatatgtGGTGCAGTCAAATCAACTAAGAAACGACTTTCTCGTCACAGAGAATATCATCATCCGAATAAAATGCATAAGTGTACGTTATGCACTAAGGAGTTTAAAATTGCATTAGCACTTCAGGAGCATGTAGCAGCAGTACATACGGGTCAGCCGTTATATTCATGTAGTTTCTGTCCGCaaacatttaaatcaaatgGGAATATGTATACTCACAAAAAAAGAGTACATCCAAATGAGTGGGtgccaaaaaaaatatcaaccacgaaaaaaATCCACGTAGAAGATGCAGCatccaataaaatttgtaatacaTGTTGGAAACATTTAGATGACTTTCATAGATTCTGGCTGTTCATAAAGGAAAAGCAACAAACATATCAGGACCTTACCAATATTAAATGCGATCctcttgaaaattttaagaaagagtCATCACCTTGGGAAAAAGATGATATAAAGGATGTGCAGTTGCACGAACTGTCAATTATTAATGAATCAAAATTTGGGAAGGCAGAGCTAAATTCTGAAGAGTTTAACGGACCCGAATTAAGCAATGTGCTGGATTCAGATAAAGATGATTTTATATCGCATGatgGAGCAAGTGATGATTCAGACTATCTACCCAAAAGCATAACGAAAAAGCTAAAACAAAGTACTGGACAGCGGACACATTGCCTATCGCTCAAAACTCAAAATACTAGCTTAGTCAAAAAGCCGCGAAAAGTTTCTTATGCGAAACAACTGAAGGCAGATGATAACAGAAAATTGATaTGCGAAGTATGCAATAAAAGGTCGGCTAACAAGAATGCATTAAAAAGACATATGTCCAGACGCCATCCATCGGaacaacaaacaattttacTTGCGAAACAGCTGACAGATGATAATACAAAATTGAAatgtAAGGTATGTGATAAAGAGTCAGCCAACAAATATGCACTTAAAAGACATATGTACAGAAGTCATCCATCGGAGCAAGAACTTAAGTTTTATTCTCATCAGGAGTTACAAGCGCATCAAAAAAGCGAACATGCTGAAGAACGTAAGATTGTGTGCGATAGTTGCGGTAAAGGCTTTAAGACAAAAGTAGGTTATGAATATCATTATAAAAATGAGCATTTGGGTATCACACTACCTGAAGCACAGTGTCAGATTTGCAAAGAATGGTTAAAGAATCGCGCTACTTTGGTCCAGCATATGTATAAGCATAGAGATGAAAGTTCAGGCACAGATTTTGTGTGCAACATTTGTGGTGCCGTAAAATCAACTAAGCGAAAGCTTACCTGTCACAAAAGATATAATCATCCAAGCAAAATGCATAAATGTACGCTATGCAGTAAAGAATTCAAAAGAGTGCTGGCGTTAGAGGAACATATAGCAGCCGTTCATACGGGTCAGCCTTTATATACATGTCGGTTCTGTCCGCAAACATTTAAATCTAATGCAAATATGTATAATCACAGAAGAAGGCTGCATCCATCTgagtgtataaaaaaaaaaatttcagcatcgAAAAAAAGATGTGATAATAGAAATATTCCAATGGAAATTGAACaagttacttaa
Protein Sequence
MEDVVSSKICNTCWKHLDDFHRFWLFIKEKHQTFQELAKVKCDPLEDDFKKESSHWEKDDVKDVQLHELSIINESSFVKAELKSEEFKATNFSEEVKSDKDDLTLHDETGDDSDYLAKSEPRQLKESKHGKRCLPYKSKNTTSAKKQRKVFTAKKLKTVENTKLICEICNKESANKNALKQHMYRRHPTELELKYSCCLCVKKFAKKYILEQHLNWHRTSKRNICETCKKGYCTKQELKAHQKSDHADVFKIICDSCGKGFKTTTGYSNHYKQDHLGTTRPEAQCEICKEWLKNDSSLLQHMYKHRDESSGKDFVCKICGAVKSTKKRLSRHREYHHPNKMHKCTLCTKEFKIALALQEHVAAVHTGQPLYSCSFCPQTFKSNGNMYTHKKRVHPNEWVPKKISTTKKIHVEDAASNKICNTCWKHLDDFHRFWLFIKEKQQTYQDLTNIKCDPLENFKKESSPWEKDDIKDVQLHELSIINESKFGKAELNSEEFNGPELSNVLDSDKDDFISHDGASDDSDYLPKSITKKLKQSTGQRTHCLSLKTQNTSLVKKPRKVSYAKQLKADDNRKLICEVCNKRSANKNALKRHMSRRHPSEQQTILLAKQLTDDNTKLKCKVCDKESANKYALKRHMYRSHPSEQELKFYSHQELQAHQKSEHAEERKIVCDSCGKGFKTKVGYEYHYKNEHLGITLPEAQCQICKEWLKNRATLVQHMYKHRDESSGTDFVCNICGAVKSTKRKLTCHKRYNHPSKMHKCTLCSKEFKRVLALEEHIAAVHTGQPLYTCRFCPQTFKSNANMYNHRRRLHPSECIKKKISASKKRCDNRNIPMEIEQVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-