Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759209.1:20351247-20355916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.084 8 7.9 0.2 2 20 315 333 314 334 0.94

2 11 0.0007 0.067 14.5 1.7 1 23 343 365 343 365 0.97

3 11 0.00094 0.09 14.1 4.2 2 23 372 394 371 394 0.95

4 11 8.5 8.1e+02 1.6 2.1 1 8 399 409 399 423 0.65

5 11 0.0024 0.23 12.8 10.6 1 23 428 450 428 450 0.98

6 11 6.8e-05 0.0065 17.7 1.9 1 23 456 478 456 478 0.98

7 11 2.4e-07 2.3e-05 25.4 2.8 1 23 484 506 484 506 0.99

8 11 1.1e-05 0.001 20.2 2.1 1 23 512 534 512 534 0.98

9 11 2.3e-05 0.0022 19.1 0.4 1 23 540 563 540 563 0.97

10 11 0.0057 0.55 11.6 3.2 2 23 575 597 574 597 0.95

11 11 7.1e-05 0.0069 17.6 0.8 2 23 604 625 603 625 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.084	8	7.9	0.2	2	20	315	333	314	334	0.94
2	11	0.0007	0.067	14.5	1.7	1	23	343	365	343	365	0.97
3	11	0.00094	0.09	14.1	4.2	2	23	372	394	371	394	0.95
4	11	8.5	8.1e+02	1.6	2.1	1	8	399	409	399	423	0.65
5	11	0.0024	0.23	12.8	10.6	1	23	428	450	428	450	0.98
6	11	6.8e-05	0.0065	17.7	1.9	1	23	456	478	456	478	0.98
7	11	2.4e-07	2.3e-05	25.4	2.8	1	23	484	506	484	506	0.99
8	11	1.1e-05	0.001	20.2	2.1	1	23	512	534	512	534	0.98
9	11	2.3e-05	0.0022	19.1	0.4	1	23	540	563	540	563	0.97
10	11	0.0057	0.55	11.6	3.2	2	23	575	597	574	597	0.95
11	11	7.1e-05	0.0069	17.6	0.8	2	23	604	625	603	625	0.96

Sequence Information

Coding Sequence: ATGGCACTGGACATATGTTTAGATCGAAGGACTTTCTTGGAGCAGATTTGCCGTGCCTGCAGTCGCTACTACAGCTATGATGGcagtgaagaagaaaaaatggaattttatAGGATATTCAATGATGAAAAGCCACAGCCTATGGATAACactaaaaatgttgatgatTCTGGGTATGTAAATGTTGACGAAGCGTATGGTCTGGGACTCTGTGAAGAAATCAAAGAAATATTCCAGGAAATCATTATTTGGAATTTAAATATAAAAGCCGGCGATGGTTTACCACAGCAAATTTGTCGTGATTGCATGGAACGTTTTCGCAATGTTAAAATCTTTCGCGAAGAATGTCTGGATACACAAAAAGTCTTGGAATCGTATTTTAAAGACTTCAGCTTATTAACAAGTAAATCACCAAAGACAGAGTCAGTTAAAAGTGAACCAAGTACATCACCTATGCCGCCATTTTTTAATCCTGACGATTTAGTGGAAGAGGTACCAGAATCATCACCAGAGCACAGTCTATCGCTAACGTTAAGTCCAAAACTTCAGCATAGTCCAAAATTTACCGATGCTGTCTATGCGGAAAGCTCCATGGGAACTCCACCGCCAATTTTTGAGGAAATTAAAACGGAACCAATTGATGTACAGACAATGGAAAGCATTAAAGCTGAGGCTGATTTACAATTAGAAACAAAACCGACGTTAGAAATTAAAGAAGATGATAAGACAACGTTACAAACAGTGTTTTTAAGCAATGCTCCGATTGCACCACTAAAGGAAATGTGTTATTCCAGCAGTGATGATGAAGACGATGATGAATCTTCAACGCCCACAACAGATGAAGAATCTGACAACCACACATCATTCGATGCGGATGAATGTGAGTCAACATACGAAACCAGCAATCTCGTAGATCCCCGTTATGATGCACGTAATCCACTgcaatgtaaaatttgttttgatatttttccaaaacgatCCTTATTGAAGGAGCATCAGATATGTGCACATCCAGAAGATAAGCCATATGCTTGTAATCTATGCCCGAGTACTTTCAAAACGAATTTCACGCTCTCACAACATAGACTAAAACACAACCGCCTCGACACTATACGTTGCGAATTgtgctcaaaatattttcgcaGTCAGCTGCATTTGCAGCGTCATACCAAGAATTTCCATTTGACTTCAACTTATACATGCCACATTTGTCATGCTCAACTGGAGAAATATACGCAGATTCGTTTTCAGTATCACGTGCGTCAGCATGGTGAGAAGCGTTTTCACTGTCATTTTTGTGATAAATCATTTCATCAGAAAATCCATTTGGTAAATCATGAGCGTACCCATACCAAGGAACAGCCATTTCGATGTGATATTTGTGGAAAATCTTATCGTCAACAAACTGCTTGCCAAGAACATATACTGACACATTCAGATCCAACGccttttaaatgtaaaatttgcgAAAAAGGTTTTACACAACGATCCAGCTTACGTTTGCATTACCGTACACATAGCGGCAACAAACCATATCACTGCGATCTCTGCGGGCAGAACTTCgcacaaaaagtacatttagaAGTGCATCAACTTACGCATAAGGAACCAATTGCATATCAATGTGAGATCTGCAATCAAAAGTTTCGTATGCTAGCTCAACTGACGTCACATATTCAGCAAGTGCATACAGCTTCAGGTGATGCTGTGACAAAGTGTTGTATTTGTGACCATTGTAATGCACTTTTTCCCAGTCAGACACATTTAGATGCACATATGAAGAATGTGCATTATACCAAGCGACAACTTAGTTGcgttttttgtagaaaaacatTTGCATTAGCAGTAAATTTGAAAAGCCATATGAAAACACATGCTCAAAGAAAGTAA
Protein Sequence: MALDICLDRRTFLEQICRACSRYYSYDGSEEEKMEFYRIFNDEKPQPMDNTKNVDDSGYVNVDEAYGLGLCEEIKEIFQEIIIWNLNIKAGDGLPQQICRDCMERFRNVKIFREECLDTQKVLESYFKDFSLLTSKSPKTESVKSEPSTSPMPPFFNPDDLVEEVPESSPEHSLSLTLSPKLQHSPKFTDAVYAESSMGTPPPIFEEIKTEPIDVQTMESIKAEADLQLETKPTLEIKEDDKTTLQTVFLSNAPIAPLKEMCYSSSDDEDDDESSTPTTDEESDNHTSFDADECESTYETSNLVDPRYDARNPLQCKICFDIFPKRSLLKEHQICAHPEDKPYACNLCPSTFKTNFTLSQHRLKHNRLDTIRCELCSKYFRSQLHLQRHTKNFHLTSTYTCHICHAQLEKYTQIRFQYHVRQHGEKRFHCHFCDKSFHQKIHLVNHERTHTKEQPFRCDICGKSYRQQTACQEHILTHSDPTPFKCKICEKGFTQRSSLRLHYRTHSGNKPYHCDLCGQNFAQKVHLEVHQLTHKEPIAYQCEICNQKFRMLAQLTSHIQQVHTASGDAVTKCCICDHCNALFPSQTHLDAHMKNVHYTKRQLSCVFCRKTFALAVNLKSHMKTHAQRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01486649;
90% Identity: iTF_01486649;
80% Identity: -