Mpla000356.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- PZF1
- Assembly
- GCA_963662105.1
- Location
- OY759208.1:3881841-3885717[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.7 3.5e+02 2.8 0.8 1 16 61 76 61 78 0.83 2 10 0.001 0.098 14.0 1.1 2 23 228 249 227 249 0.97 3 10 4.2e-05 0.0041 18.3 1.9 1 23 255 278 255 278 0.97 4 10 0.0041 0.39 12.1 1.5 3 23 288 311 286 311 0.93 5 10 3.5e-06 0.00034 21.7 0.8 3 23 323 343 321 343 0.96 6 10 1.3e-05 0.0012 19.9 5.1 1 23 351 373 351 373 0.97 7 10 0.0018 0.18 13.2 0.7 1 23 379 401 379 401 0.96 8 10 0.00055 0.053 14.8 0.1 2 23 408 430 407 430 0.96 9 10 5.2e-05 0.005 18.0 1.6 1 23 436 458 436 458 0.97 10 10 2.1e-06 0.0002 22.4 2.9 1 23 464 486 464 486 0.98
Sequence Information
- Coding Sequence
- ATGGCGCCACTTATTCatcgtaaaaattttcattcgtTTTGCCGTACTTGCCTTAAAGAAATTGCAGCACTTTCTTCTGCGAAAGGTCAAAAGTTCAATCTTCACCAATCACCAAATCTCTTGGAGTGGTTTAATGTCTGCACTTCATTAGATGTCAACAAAAAAGATGAATATCCAAAGTTTATGTGTGAAGAATGTTATAAAAACCTTAAAAGCTTTTATGAGTTTCGTGAAATGAccattaaatcaaaacaaactcTGGATAGTATTTTGAGTAATGGCAAAATCGAGACAGAGACTAGATTTCAGATGACAAAAACAGAACTTTTAGACAATGAACCCGAAACTCAGGAGCAAGATACTTGGCTGGACTTTAAAGTGGACGATAAGTCATTGATAACTCCAACATTTGTAAATAACTcggaaaacataaaaaaagaagttGATACAAATGTAACAGAAACTTATATAGAAAGTTTGGAAGacagaaaattatttgaatataaaaactgttctgaaaattcttttgagaaaaatattgaaaacctACAAAATACAACAGATCTTCTAGAAGTTGCCAACACAGTGGATGAAATAGATTACACATCAGACGATAGAATAATTATAGAAAACTCTTCAGACGAAGTggcaaaaaacattaaaataccaAAAGGCTCTCTTGAATGTTCTTTATGTTCACGATTTTTCTATAAACAAGAAAAGTTGGATACACATTTGCGTGTACATCAAGGTTTAAAAGCTTATCAATGCAATAAATGTGATCGTGGATATAGTAAAAAATACCGTCTTAAAATTCATATTAGCAGAGATCATGACAATACCTTTAATGAAGACATCATATGTTCCTTTGATGGATGTGGCATTAAATGCCGAAACAGTGAATCTTACAATTCACACTTGCGAAGAAAGCACAGCAGTCGTCCACCTATATTGACACAGGTTATTTGTGAAGATTGTGGACTTTCTTTTAAAACTAATGCCTCACTAAAGAAACATCGTTTCAAACACGGTCCTCCAGAAGCTTATCCATTTAATTGTGATCAGTGTGGTAAATGTTTTCCCACAAAGTACAAATACAAACAACATATGGATAGGCATGCGGGTATAAAAAACTTTGAGTGTCTGATTTGTGGTTTAAAAAAGACAACCAACGACGAGTTACGCACTCACATGAATTTTCATACCAAAGAAAAACAGTGGTCTTGTTCATATTGTAGCAGCATTTTTAATAGCTCTGGCAATTTGGGTCGACATGTACGGGTTGTTCATAAAGGAATTCGTAAATTTGCATGCAAATACTGTGATGAAACTTTTGGTAAAGCGGAATCATTGAAACATCATGAAATGCGACATACAGGAGAAAAACCCCACCAATGCCAGGCTTGTGGCAAGCGTTTCATACAGAAAACAGCACTGCGTACACATATGAAAACGCATGAAAGAAAACAATGTGCAAAATGA
- Protein Sequence
- MAPLIHRKNFHSFCRTCLKEIAALSSAKGQKFNLHQSPNLLEWFNVCTSLDVNKKDEYPKFMCEECYKNLKSFYEFREMTIKSKQTLDSILSNGKIETETRFQMTKTELLDNEPETQEQDTWLDFKVDDKSLITPTFVNNSENIKKEVDTNVTETYIESLEDRKLFEYKNCSENSFEKNIENLQNTTDLLEVANTVDEIDYTSDDRIIIENSSDEVAKNIKIPKGSLECSLCSRFFYKQEKLDTHLRVHQGLKAYQCNKCDRGYSKKYRLKIHISRDHDNTFNEDIICSFDGCGIKCRNSESYNSHLRRKHSSRPPILTQVICEDCGLSFKTNASLKKHRFKHGPPEAYPFNCDQCGKCFPTKYKYKQHMDRHAGIKNFECLICGLKKTTNDELRTHMNFHTKEKQWSCSYCSSIFNSSGNLGRHVRVVHKGIRKFACKYCDETFGKAESLKHHEMRHTGEKPHQCQACGKRFIQKTALRTHMKTHERKQCAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -