Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759211.1:77319178-77323754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7 3.5e+02 2.8 2.7 1 19 249 267 249 270 0.85

2 12 3.7 3.6e+02 2.7 0.2 2 21 295 314 294 315 0.86

3 12 0.02 1.9 9.9 1.8 1 23 330 352 330 352 0.98

4 12 1.4e-05 0.0014 19.8 1.4 2 23 364 385 363 385 0.97

5 12 0.00081 0.077 14.3 0.7 1 23 411 432 411 432 0.97

6 12 0.00013 0.013 16.7 0.7 1 23 438 460 438 460 0.97

7 12 9.2e-05 0.0088 17.3 0.8 1 23 482 504 482 504 0.98

8 12 2e-07 2e-05 25.6 0.6 1 23 510 532 510 532 0.99

9 12 0.00044 0.042 15.1 1.8 1 23 538 560 538 560 0.98

10 12 1.8e-05 0.0017 19.5 3.0 1 23 566 588 566 588 0.98

11 12 1.6e-05 0.0015 19.7 0.4 1 23 592 614 592 614 0.98

12 12 0.034 3.2 9.2 0.6 1 23 626 649 626 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7	3.5e+02	2.8	2.7	1	19	249	267	249	270	0.85
2	12	3.7	3.6e+02	2.7	0.2	2	21	295	314	294	315	0.86
3	12	0.02	1.9	9.9	1.8	1	23	330	352	330	352	0.98
4	12	1.4e-05	0.0014	19.8	1.4	2	23	364	385	363	385	0.97
5	12	0.00081	0.077	14.3	0.7	1	23	411	432	411	432	0.97
6	12	0.00013	0.013	16.7	0.7	1	23	438	460	438	460	0.97
7	12	9.2e-05	0.0088	17.3	0.8	1	23	482	504	482	504	0.98
8	12	2e-07	2e-05	25.6	0.6	1	23	510	532	510	532	0.99
9	12	0.00044	0.042	15.1	1.8	1	23	538	560	538	560	0.98
10	12	1.8e-05	0.0017	19.5	3.0	1	23	566	588	566	588	0.98
11	12	1.6e-05	0.0015	19.7	0.4	1	23	592	614	592	614	0.98
12	12	0.034	3.2	9.2	0.6	1	23	626	649	626	649	0.95

Sequence Information

Coding Sequence: ATGCGAAAGCCTAGAACAGCAGGAACTgaatACAGACTTGAAGAAAAGGCGGCTCATAATGTTGATGGTTATATGTTGGTGGAAGAAACAGGAACGTTGGAAGTAGCAACTGAAACAAGTGTGGATGGCAACGTGAAATTTTCGTACAGCCCAAGAGGAATCGATGAAGACGTTGAAGAAGATGACATAATTTATGTTGATGAAGTGGAGCTACAGGAAGAAGCTGACATAAatGAAGATGTTGATAGTAACGTACTAGAAGAGCAACTTGATGTTAAGAAGTTACATGAAGAGAGCAACGAATCTGAATTTTATCTGTTACACGAAAATGACAGTGATGATCAACTCCTTATAGAAATGCCCAACAAAGAAATAACATTAGAAGAAGATAAtgaatatgaagaaaaaataacacaCACATTACATTTGCGTCGAAATTCAAGAGACTGTGTTGACTATTACTATTGTGGACAATGCCAAGTGGACTATGATTCTATTGAAGAGTTTTCGCGTTGCCACGCGCAAGACGAAACTAACTTATTTATGCAAGATGAAGTGATTGTGCCAGAATTTGATGTTGTCTACAGTGAAACAGAACAAGGAACTGAACTTAAACCAGATATAATCGAACTGATTCACAACgttaattataatgaaaaacaaagtcATAATGCAAAGagcgaagaaaaattaaaagaggccCTCATAAAACAGGAGACCTTAGATGAGGACAATAACGATAAGTTCTTTTGCTATGAATGCCATATggtttttaatgattttaaaacagCAGAAGATCATGAGTGTTCTTCGCAAACAATTGCATCAGCATCAAATGATGACTCTAAATCTcttaaaaataaacaagaaCATTGCTTTTACGCATGCATATTCTGCCaggcaaaattaaaaacatacgGAGGATTACAAAGGCATCAGCTCAATTGTCGCATGAAgccTCCCTCAATGCAAGCACCACCTGATGAATTTAAATGTGAAAcctgctttaaaattttaccatcTGCCAAAGCGTTACTTTCACATAAGCGTCATCATGAAATGCCGGAGAAAGATACTAACGATGAAATAAAATGTTCCATTTGCTCCACGGTGTTTAgatcttacaaaaatttaaaGCTCCATCAAAAAATTCACGATAAAAAGCCAATCAAATCAATACAGGAAGCATTGCCATTTGGCGCTGCATTGGAGTACAATgagtcaaataaattttattgcgaaatttgcaacaaaaaTTTTGATCAAAATCTATTAGCTGTACATAAGAATATGCATCAAAATGTCGAAGAGTTTAACTGTGGCATTTgtaataaacaatttgaaaatatgtcCAGTTACGAAATGCATATGCAACTTCATGCAGACAAGACACAAGAACCACGTGGACAAACAAAAGCTGAACGTAGTGGTATCAAATTGCCCTTTCCTTGTCAATATTGTGGCCGTGAATTTGCACGACCACACGAAAAAGTTAAACATGAACGCATACACACTGGCGAAAAACCATACGAGTGTGAAGTGTGTGGCAAAACATTTAGAGTTTCGTATTCATTGACACTACATCTAAGAAGTCATACAGATATAAGACCATATGTTTGTGCTACATGTAACAAGCGtttcaaATCACAACCTGTCTATGCCCATCATCTGAATACTCATCTTGCTGAGCGACCATACAAATGCAGTGTTTGCCCGAAAAGCTTTCGTACTTCAGTCCAATTGTGTGGCCATAAAAACAGTCATTCGAAACCATTCAATTGTACAGAATGTAATAGACCATTTGCCACTTTGTATGCAGttaaaattcatatgaaaaccCATTGTAAATCTAACAAATCTAGTGAGAATTTAAAACATCGTTGCACAGTTTGTGGAGCTGTATACGCACGTGTTTTTGCATTACGTTTTCATATGAAGGAGCAGCATTCAATGGAATTGGGAGATGATATACCCGAGTTTGAATTAAATGGTGTCGAAGCAGTTGGAACTGCTGCTGTTACATCTTCCGTTGACTTAGATGATGAAGATGCTGCAATTTTAATAGCTGCAGCTACTGAAGCCTCGAATAACGCAATAGCAGCAATTGGTACAAAAAACAATTACTCACAAAATTGCTATAATGAGGATGAAATTTCAACGCAAGCAATATTACAAAGTGATGAGaTTATTGTTGATAATTTTCATACAGAAGAAATAGTTACGGATTGGTAG
Protein Sequence: MRKPRTAGTEYRLEEKAAHNVDGYMLVEETGTLEVATETSVDGNVKFSYSPRGIDEDVEEDDIIYVDEVELQEEADINEDVDSNVLEEQLDVKKLHEESNESEFYLLHENDSDDQLLIEMPNKEITLEEDNEYEEKITHTLHLRRNSRDCVDYYYCGQCQVDYDSIEEFSRCHAQDETNLFMQDEVIVPEFDVVYSETEQGTELKPDIIELIHNVNYNEKQSHNAKSEEKLKEALIKQETLDEDNNDKFFCYECHMVFNDFKTAEDHECSSQTIASASNDDSKSLKNKQEHCFYACIFCQAKLKTYGGLQRHQLNCRMKPPSMQAPPDEFKCETCFKILPSAKALLSHKRHHEMPEKDTNDEIKCSICSTVFRSYKNLKLHQKIHDKKPIKSIQEALPFGAALEYNESNKFYCEICNKNFDQNLLAVHKNMHQNVEEFNCGICNKQFENMSSYEMHMQLHADKTQEPRGQTKAERSGIKLPFPCQYCGREFARPHEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRSHTDIRPYVCATCNKRFKSQPVYAHHLNTHLAERPYKCSVCPKSFRTSVQLCGHKNSHSKPFNCTECNRPFATLYAVKIHMKTHCKSNKSSENLKHRCTVCGAVYARVFALRFHMKEQHSMELGDDIPEFELNGVEAVGTAAVTSSVDLDDEDAAILIAAATEASNNAIAAIGTKNNYSQNCYNEDEISTQAILQSDEIIVDNFHTEEIVTDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01486530;
90% Identity: iTF_01486530;
80% Identity: -