Mpla001801.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- -
- Assembly
- GCA_963662105.1
- Location
- OY759208.1:29413115-29416925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.18 13.1 0.3 1 23 118 141 118 141 0.93 2 13 0.006 0.58 11.5 1.1 1 23 146 169 146 169 0.93 3 13 4e-05 0.0038 18.4 5.5 2 23 179 201 178 201 0.96 4 13 0.00019 0.018 16.2 8.6 2 23 372 393 371 393 0.98 5 13 1.1e-06 0.0001 23.3 5.6 1 23 399 422 399 422 0.97 6 13 7.4e-05 0.0071 17.5 1.5 1 23 427 450 427 450 0.98 7 13 0.0024 0.23 12.8 8.6 1 23 461 483 461 483 0.95 8 13 0.00066 0.063 14.6 3.9 1 23 488 510 488 510 0.97 9 13 6.4e-05 0.0061 17.7 0.4 1 23 517 539 517 539 0.96 10 13 7.7e-07 7.3e-05 23.8 0.7 1 23 545 567 545 567 0.98 11 13 2.3e-05 0.0022 19.1 4.0 3 23 575 595 573 595 0.96 12 13 1.6e-07 1.6e-05 25.9 1.6 1 23 601 623 601 623 0.99 13 13 0.17 16 7.0 0.1 1 23 628 651 628 651 0.91
Sequence Information
- Coding Sequence
- ATGCAAACTGATAGAGCAGTGGCAAGTGACCACAAATTGGACATGGAGCGCATTTGCCGTGTGTGCTTGCGGGACAGCGAAGAACTATTTTTGCTTTTCGACGAAAGTTATTCAGTGGAGGGAGTTTCCATGTCACAAATTATTACCGATTGCACTATATATAGGGTGGAGCGCTACGATGATCTGCCGCATCAGATTTGTGCTGCTTGCATGAGTTTAGCACGTACAGCATACTATTTTAAGCAGCGCACAGAAAGATCCTACCGTCACTTAATTGATCTTATCGGGGATGTGAGTGTCAACTCAGCTTTCAGATCAGAGAAATGGAcacaaacagaaaaattttcaatatatccaTGCGAATTGtgtgattcaaaatttttcgatgcGTCCGACCTTAAGGAACATCGTTACAATGTCCACAAAGGTGAATCCTATCACTGCAAAGTATGTGCTAAACCATTTGCGCTTCTCCGTCATCTTCAGAGTCATTTGGCGTTGGCGCATCCTAACGAAGCATCGATGCATAATACACAATGCACCATTTGTGAAAGACATTTCTCACGTAAAGAACATATGCGTCGTCATATGCTGAAAGTGCATAATGTAAAGCAAAATCATCATAAACTTAAACGTGGAACGAAATCGCTAGAGGAGCCAGAAATCGATCTTAAAATGGAAATGTGTTCCTTTGAGCAAGCAAACGATTTTTTTCATGATACATCTGTGGCAGGTACAACAAATTGGAATAAATATGCAGATGACGATTTGGGAAAAAGTGATGCTGCAAGTGACACTAATCCTATTTCACCTGATTGTACTGACGAAGGTGGAGATGTTCATTTACCAGAGCTGCAACCGTCAACCTTATTAGGAAAGCCAATTGTAAAAGttGAACCAGTTGATGAGATGTTACCTGTTAACTTCGTCTCAACTGAATTAAATGTTAAGTCTGAAGTACAAGCTGAACAACAAGTAAATGAAAATGCTACAATTATCAAAAGCGTACACGAGAAAATGGTTGAAGGAAAGCCTATATTAAAAACAGTTATTATACGggaatatttgaatgaaaaaactaATAAACGCGCATGTATGAAGACAAGGGATAACAAGTGCACTGAGTGTCAGCGTGTATTTACGCGCCACTGCCATTTGTTGCGTCATATGCTAACACATTCCACAGAAAAACCTTATGAGTGTGAGCATTGTCAAAAACGTTTCACAAGAAGAGATCACTTAAAGAATCACATAAATAGCTTGCATcgtgaaaaacaatttaaatgtgatAAATGCGAATGCGCATTTCCACGCAATGATTCATTAGCACTTCACATAAAGTCCAAACATACCGCTGATGGACTGAGTTTAAATAGAGTACATCATTGTGATTTATGTGAAAAAtcatttactacaaaaaaatacttACATAGGCATCGTTTACTGCATACGGATCGTATATTTGCGTGTAAAAGTTGTGAAAAGACTTTTAAGAAACGTACCCAATTTCGTGAGCACGAAAAGACACACAGTAATATGGAACGTAACTTTTTATGTTCAATATGCGGTGACAGTTTTATGCGTAACGCTTATTTAATGGTACACATGCGCCGGCATACGGGTGAAAAACcatataaatgtaaatattgtGACAAAGGATTCCCACGAGCAACCGATTTAAATGACCATGTACGCTACCACACTGGGCATAAACCACACCTCTGTACACTCTGCGGCAAAGGTTTTCATCGCGCCTACAAATTAACCATACATATGCGCACACATACTGGTGAACGTCCATTCCAATGTGATCATTGCCCAAAGAGTTTTGCTCAGAGCAATGATCTTAAAGCTCATGTGCGTCGCCATACAGGCGAACGTTTTAAATGCGAAAATTGTGATGCAGATTTTTTGCAGTTGTATGGCTTACGACAACACGCATTAGCTGCACATGGTATACAAATTGATACTGTTAACGGTCGTTTGGAAAAGTTTCCGAGTCTGCCAATTAATGCTAAAGAAATGCTATCAGAAAAAAACTTGCACCAGCAACAAAATTTACCAAGTTTTACAATTACAGAAGTTCTACCTAATACTACAGCCCCTGGAGCCTTGCAAAAAAGTTTACAACAAAACTTAACAAATTATGCTGTTTCAGATGTgatgcaaaaaaatttccagCAACAGAATTTAGCAAATTTTGCAACTACAGAAGTGCATCAGAAAAATATGCCGCAGCAAACTTTTCCTCATACTACACACCAAGAAGTATTTCACAAAGCAATGCAGCAACAGTTAAATGCACTAAAAGATAATTTACAACATATGGACAGCCACAACATTAATTGA
- Protein Sequence
- MQTDRAVASDHKLDMERICRVCLRDSEELFLLFDESYSVEGVSMSQIITDCTIYRVERYDDLPHQICAACMSLARTAYYFKQRTERSYRHLIDLIGDVSVNSAFRSEKWTQTEKFSIYPCELCDSKFFDASDLKEHRYNVHKGESYHCKVCAKPFALLRHLQSHLALAHPNEASMHNTQCTICERHFSRKEHMRRHMLKVHNVKQNHHKLKRGTKSLEEPEIDLKMEMCSFEQANDFFHDTSVAGTTNWNKYADDDLGKSDAASDTNPISPDCTDEGGDVHLPELQPSTLLGKPIVKVEPVDEMLPVNFVSTELNVKSEVQAEQQVNENATIIKSVHEKMVEGKPILKTVIIREYLNEKTNKRACMKTRDNKCTECQRVFTRHCHLLRHMLTHSTEKPYECEHCQKRFTRRDHLKNHINSLHREKQFKCDKCECAFPRNDSLALHIKSKHTADGLSLNRVHHCDLCEKSFTTKKYLHRHRLLHTDRIFACKSCEKTFKKRTQFREHEKTHSNMERNFLCSICGDSFMRNAYLMVHMRRHTGEKPYKCKYCDKGFPRATDLNDHVRYHTGHKPHLCTLCGKGFHRAYKLTIHMRTHTGERPFQCDHCPKSFAQSNDLKAHVRRHTGERFKCENCDADFLQLYGLRQHALAAHGIQIDTVNGRLEKFPSLPINAKEMLSEKNLHQQQNLPSFTITEVLPNTTAPGALQKSLQQNLTNYAVSDVMQKNFQQQNLANFATTEVHQKNMPQQTFPHTTHQEVFHKAMQQQLNALKDNLQHMDSHNIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486498;
- 90% Identity
- iTF_00972411;
- 80% Identity
- -