Mpla014295.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963662105.1
- Location
- OY759209.1:83920691-83928597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0041 0.4 12.0 1.9 1 20 129 148 129 149 0.95 2 12 1.4e-06 0.00013 23.0 0.4 3 23 201 222 199 222 0.93 3 12 0.15 14 7.2 0.3 1 23 228 250 228 250 0.95 4 12 1.8e-06 0.00017 22.6 1.2 3 21 259 277 257 278 0.94 5 12 1.4e-05 0.0013 19.8 0.9 3 23 291 311 289 311 0.96 6 12 6.2e-05 0.0059 17.8 3.0 1 23 322 344 322 344 0.98 7 12 4.4e-05 0.0042 18.3 0.8 1 23 350 372 350 372 0.98 8 12 3.8e-06 0.00036 21.6 0.5 1 23 378 400 378 400 0.99 9 12 2.4e-06 0.00023 22.2 1.6 1 23 406 428 406 428 0.98 10 12 3.9e-05 0.0037 18.4 1.5 1 23 432 454 432 454 0.98 11 12 3.8e-05 0.0037 18.4 2.9 2 23 469 490 468 490 0.96 12 12 0.097 9.3 7.7 0.2 3 23 504 525 502 525 0.94
Sequence Information
- Coding Sequence
- ATGGAAAGAAAATCGGAACGAACCCGAGCCAGCCGAAGTGGCATAAAAATTCTGAACGATGAAAAATTACAGGCCGCGCCTCTGATTCCAGCTGTGACTTCTGAACCACTGTCACCACCAAAACAGTTTAAGATGTCCATTGCCAAGAGCAAATCAGAAACAAATCAACAGAAAAAAATGGATCATTATGTGTTGCATACCGTTAAGGGAGAAGCTGATGCAGAGGGTTATGATGGAgaaactattgattttatatacaCAGATAATCATGGTGAAGAAATTTTTGGCGGTCCAAGTGGAGAGATTACCGAAACGCTGCATTTAAGTGGCAACGAAGATGAACCTGAAAATATGAGTGATATCAGAACTGAAGAGATTGTTGAGCACGTGTGTGGCAAATGTTACAGAAGCTTTAAACGCTTTAACGCATTAAAAAAACACTTGGACTTTTGTCGCTTTGACAGTAAATATCATTTGCGTAAAGCTGAGATGcttaaaaatgttgagaaaattgaaaaggaCGCTGTCATAATGGAGAACAAAGACATTTGTTTTTGCTGTGGTGAAAGTTATGATACATTTCATCTTGGTCACATTAACTGCCCTGATTGTCCAAAATCTTTTAAGACACAATCGAGCTATGAACGTCATATTTTCATAACGCACTCTGAATTCAATGATTTTCCATGTACTATTTGTAATGCAAAACTACgaagtgaaaattttcttaaacttcACGTTGAACAACATCAAAATCGTGGCAAACCATGGGCCTGTAAAATTTGTGGCAAAGATTTCACACGTTCGTATCATTTAAAACGGCATCAAAAGTATTCCTCTTGCTCAGCGGATATTAATGATGCTATGAATTGTAAAGTTTGCAATAGAGTCTTCTATCGTTTGGATAATTTGCGTGCTCACTTGAAACAGCATTTAGGTACACATTCTTCCAAGAAGTCAGAATATATGTGCCCTATTTGTAAAAACTGCTTCTATAGCTTATCAACTTTAAACATCCACACCAGAACCCACACAGGTGAACGTCCATTCGAATGTGATTTGTGTGAAAAAAAGTTTCCTTCATTGGTTGCACTAAAAAAGCATCGTCGATACCATACTGGAGAGAAGCCTTACACTTGCACTGTttGCGGTCAAACATTTGCCGTCAAAGAAGTTTTAAATCGGCACATGAAACGTCACACAGGCGAACGTCCACATGTATGCCAAGAATGTGGCAAGAGTTTTATACAAGGAACACAGCTAAGAAATCATTTAAGAACGCATCTACGCCCATTTGAGTGCGCAAATTGccaggaaaaatttaaaactcaaaaGCAACTCGAGAGACATGCAAAAAGTCATAAAGCTAAAAAGACAAAGCGAAAGCATAAAACTAGAGACAGTGTTTGTAGTCTTTGCaataaaagttgcaaaaatagTGAGGAGCTTCAGCGACATATGGACAAACATAATGGTATCAACACTAGAAAAAGAACCTCTCGCACAGATTGCGCcatatgcgaaaaaaattttgacaccgTTAAAAACTTAGAATTTCATATACTTAAAGTACATGAAGTGGACCCCGAAGAATTTATCAACGAAAAACGCTTGCAGGAACAAGATGCGCCTGCAGTtactaaaataattaaagtcGAAAAAGCTGAAGGTGTTGAAATACTTGACGATCAAGTAAATTTTATATCGTCAAAACTAAATATAGATGATACAACCACTGATGGTGGCGTTATTGTTCAAgaattgattttagatgaaTTGCCTACAACTTCGACTTCAAAACAGACTATCTTTTTGAATAAAGATGCATTTACCGTCATTCCATTAGATTCAGCAGAAAGTATAATGCAAAGTAGTGAAGAAGCCTTTACTATACAGGCTCCACCTAAACGAGTTTCTCCTAAACGACCTTATCCTAAAGAAGCTTTTCCTGAAAAGGCTGTGCCAAGTGCCAAATCAAAAGATACGAAAAACTGTTTTAGAAAATCACTTGCTGAGAGCTTAGCTGCTGCGATTGCAGACGATGAGGACGAAGATATTAATATGGATGTCTCAAGTGAAGAGgatgaaaaactaaaagaaaacgTCAGTAAATTGTTGGATATGCTGGTGGACAAAGTGACACTTAAAAAGTTTGGCTGGCCTGAAAACTCAGTAGAAAATgtTCTTTGTCAAGTTATTGAAAACTGTGGGCATGAATTATCCAAAGATGCGGACAGTCATATAAGTTGCGATTTTGCAACACGTATGCGCGAGTATGTGAAGCTTTTATTTACAGTGGTAATACATAATGATTCTATAAAAGAATTGCTGAATAATTATCCTATCGACGAAGTTATTGAATATGTCTTGGGTAATGATGAAGATGAAGACGAAGAAGATGATGACGATAATGGTGATATGAAAAAAATGACAACAAATCAATCAATAGCGGTGAGAACCTCAAAAATAGTGGCTGGACAAGAACCTGAAAATACCAATGAATTACTGCATTTAATAGGTGAGATTATAGAGAAGCAACTGGATTGGAAAATTGCGGTAGAAAATATTAACAGAACACTTTCGCCAACAAAGGAGAAAAAAACTGTGAGAGAAAAAGCAGTCagtaaagatataaaaaaagaaaaggaaaagcCGAAAGATATGAAAGcaacaactaaaaaaatttcgccAACTAATCAAGAAGACAAACTCAAAGTCAAATCTTCAAAAGAAAAGACTCGGGATGAATCGAAACCAACAAAAGACATACGAAGCTCAGATTTAAAGAACAAGGAGAAAGATAAGACAGATAGAAAAGTTAAAGATATGCCCGAAAAAACAAAGGGAACTAGATCCAAGCCTATGACAAAGCAAAAGACTCCATCGCCAGTAAAAAAAGACTCACAATTATTAAAAGCAAATACCGtcgataatgaaaataaaaaagctcAAAGTCAATACAACGAATCTATACTTAGTACTCCAACAGCAGATCTTGGCgccaataaaatatcaaatgaaattttaaaagatgtaGAAAAACCTGCTGAATTAGAATTGAAACCGTACCTTAACAGCCCTCATAAGATTATGGAGAATGGCAGAGCATCACTAAAAGAGCATTCAGCAGGTCCTAAATCGTCAGGGAGCGGTGCAATTTCTAGTGAAATTAATCATATGAAAGCAGAATCTGATCTAGAATTACCAATTCAAAAATCTtatgaaaacatttcaaatgatataaatgATTCTCCAAAGGAAAGTACAAGCCATAATGCATCTGCGCATCGCAGATCTTCTGGAAAAATTCGTCACTCGAGTGCCACTAAGCAAAGCAaggatgaaaatgaaaacaatcaACCGCCTATAGGTCAGTTGGAGTCATTAAATACACTTAATGAAGAGGAAGCAGTTTCATCATTAGCAAATAAACCTTCAGCAACAGGGACAGTGGATCAAAAACGAACTACAGATGTCATGCGTGAATCAACTTTTATACGAGAAAACTCAAAGGAATCTGAGTCAAACAGACCGCGTACATCACTAAGACCACCTAGTGCCAGACCTGCTTCAGCTAGGCCAGGTGCCCCTAGAAGACgtgataaaaatgttgaaattatcTTGCAACCAAATGATCAAGTTAAAATGTCTGGAATAAATGTTAAACTGGAGACATTCGGGGATCTAGATGATGATGGTGAAAATATGATAATAATTGAAAACACAAATGTTGATGAGGTTTTTGATATGCATGCCAAAAAAGGGAATGCCATAGACAGTGAAGAAGCACTTGCACAACAAGGTCACTTGGTACAGCAAATTTTAGAAACTCAAAAAGAGTTGGTACATCAAAATACTGACAAAGGAAGAAATCAAGAAAAGgacTCTGGATTAAAAAATAGCTCTCTTAATAATCGTCAGAACTCTGCTCGTCAAATGAATAACTTACAAGATGTTATTCAGAATTTAACAAAATCAGTGAATCCTTTTGGAAAACTAATGGATTTTATACCAGAAGATATTGATGCAATGCAATTAGAGCTCTCTATGTGGCGTGATTCGTACACTCAATCTGCAAATGAgctgaaaaaagaaagaaggtATTATAGTATAGTGAATAGTACATAG
- Protein Sequence
- MERKSERTRASRSGIKILNDEKLQAAPLIPAVTSEPLSPPKQFKMSIAKSKSETNQQKKMDHYVLHTVKGEADAEGYDGETIDFIYTDNHGEEIFGGPSGEITETLHLSGNEDEPENMSDIRTEEIVEHVCGKCYRSFKRFNALKKHLDFCRFDSKYHLRKAEMLKNVEKIEKDAVIMENKDICFCCGESYDTFHLGHINCPDCPKSFKTQSSYERHIFITHSEFNDFPCTICNAKLRSENFLKLHVEQHQNRGKPWACKICGKDFTRSYHLKRHQKYSSCSADINDAMNCKVCNRVFYRLDNLRAHLKQHLGTHSSKKSEYMCPICKNCFYSLSTLNIHTRTHTGERPFECDLCEKKFPSLVALKKHRRYHTGEKPYTCTVCGQTFAVKEVLNRHMKRHTGERPHVCQECGKSFIQGTQLRNHLRTHLRPFECANCQEKFKTQKQLERHAKSHKAKKTKRKHKTRDSVCSLCNKSCKNSEELQRHMDKHNGINTRKRTSRTDCAICEKNFDTVKNLEFHILKVHEVDPEEFINEKRLQEQDAPAVTKIIKVEKAEGVEILDDQVNFISSKLNIDDTTTDGGVIVQELILDELPTTSTSKQTIFLNKDAFTVIPLDSAESIMQSSEEAFTIQAPPKRVSPKRPYPKEAFPEKAVPSAKSKDTKNCFRKSLAESLAAAIADDEDEDINMDVSSEEDEKLKENVSKLLDMLVDKVTLKKFGWPENSVENVLCQVIENCGHELSKDADSHISCDFATRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDEDEDEEDDDDNGDMKKMTTNQSIAVRTSKIVAGQEPENTNELLHLIGEIIEKQLDWKIAVENINRTLSPTKEKKTVREKAVSKDIKKEKEKPKDMKATTKKISPTNQEDKLKVKSSKEKTRDESKPTKDIRSSDLKNKEKDKTDRKVKDMPEKTKGTRSKPMTKQKTPSPVKKDSQLLKANTVDNENKKAQSQYNESILSTPTADLGANKISNEILKDVEKPAELELKPYLNSPHKIMENGRASLKEHSAGPKSSGSGAISSEINHMKAESDLELPIQKSYENISNDINDSPKESTSHNASAHRRSSGKIRHSSATKQSKDENENNQPPIGQLESLNTLNEEEAVSSLANKPSATGTVDQKRTTDVMRESTFIRENSKESESNRPRTSLRPPSARPASARPGAPRRRDKNVEIILQPNDQVKMSGINVKLETFGDLDDDGENMIIIENTNVDEVFDMHAKKGNAIDSEEALAQQGHLVQQILETQKELVHQNTDKGRNQEKDSGLKNSSLNNRQNSARQMNNLQDVIQNLTKSVNPFGKLMDFIPEDIDAMQLELSMWRDSYTQSANELKKERRYYSIVNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -