Mpla001843.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Meiosimyza platycephala
Gene Symbol
-
Assembly
GCA_963662105.1
Location
OY759208.1:29807575-29816432[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 3.7e-05 0.0036 18.5 0.6 2 23 225 246 224 246 0.91
2 28 2.9e-05 0.0028 18.8 1.2 1 23 252 274 252 274 0.98
3 28 2.3e-06 0.00022 22.3 0.2 1 23 289 311 289 311 0.99
4 28 0.00017 0.016 16.4 2.8 1 23 320 342 320 342 0.99
5 28 3.9e-05 0.0037 18.4 0.8 1 23 348 370 348 370 0.99
6 28 1.7e-05 0.0017 19.5 0.9 1 23 376 398 376 398 0.98
7 28 1.6e-05 0.0015 19.6 1.2 1 23 404 426 404 426 0.95
8 28 0.0076 0.73 11.2 1.3 1 23 432 454 432 454 0.99
9 28 0.00041 0.039 15.2 4.5 1 23 460 482 460 482 0.96
10 28 0.0028 0.27 12.6 5.7 1 23 488 510 488 510 0.98
11 28 2.8e-05 0.0027 18.9 1.2 1 23 516 538 516 538 0.99
12 28 2.8e-05 0.0027 18.9 0.1 1 23 544 566 544 566 0.98
13 28 0.00038 0.036 15.3 3.4 1 23 864 886 864 886 0.97
14 28 0.00064 0.061 14.6 0.1 1 23 892 915 892 915 0.97
15 28 4.9e-05 0.0047 18.1 4.1 1 23 923 945 923 945 0.98
16 28 0.00081 0.078 14.3 4.6 2 23 951 972 950 972 0.97
17 28 0.093 9 7.8 1.4 1 23 1025 1047 1025 1047 0.95
18 28 0.0015 0.14 13.4 1.3 1 23 1053 1075 1053 1075 0.97
19 28 5.7e-05 0.0055 17.9 1.2 1 23 1083 1105 1083 1105 0.98
20 28 0.0035 0.34 12.3 3.2 1 23 1114 1136 1114 1136 0.98
21 28 0.0017 0.17 13.2 0.3 1 23 1142 1165 1142 1165 0.96
22 28 0.00026 0.025 15.8 1.5 2 23 1171 1192 1170 1192 0.97
23 28 3e-05 0.0029 18.8 1.0 1 23 1198 1220 1198 1220 0.95
24 28 0.57 55 5.3 1.2 1 23 1226 1248 1226 1249 0.92
25 28 0.0007 0.067 14.5 3.3 1 23 1254 1277 1254 1277 0.95
26 28 0.00072 0.069 14.4 2.1 1 23 1283 1305 1283 1305 0.99
27 28 1.2e-06 0.00011 23.2 0.6 1 23 1311 1333 1311 1333 0.99
28 28 0.00047 0.045 15.0 1.6 1 23 1339 1361 1339 1361 0.97

Sequence Information

Coding Sequence
ATGAGCAATTCAGAACAAATTGCGGAGAACATGTGTCGCGCTTGTATGTGTAAGCACCAGAACTTTCATTCAATTTACGACGAAGCGGACAAAACGGTGAAGATATGCGAAATGTTGGCCACCACAATACCACAGCTGCTTATTCACAGCAACGACCAGCTGCCCAAGTTAATATGTATACCATGCCTCAACAAACTAAATATCACTTATCAGTTCCAGCAAATGTGCATCGCTTCGGACAAGCATATGCGAAGTCTGCTGCTCGGCTTAGTGGAAAATCTTAGTAGCAATATGGGTCAGCAGACAGAAACAGCACATGTGACTAAGCTGGAATGCAATTCAATAATAACGGAGGATTTTCTCAAGTTACAAAGCTGTATGAAAACTGAGATAAACGCTGATGAAGTCAAAGAGTTGGTCTTGGAGACATGTTTCGAAGCACGTACGGCTAAAAGTGAACAAATTTTAGTAGAATCTGGCGAAGAATATCGCCTTGAAGATGGCATCTCTTCGGAGTGGAGTGCATGTGACGACAGTGACTACAAAGGAGAAAAATCAACGTCTAAAATAAAAAGAGCAAAGCAACAGCTGCGCGCATCAAATATACATAATGAAACAGGCGTTGATGAAATAGAAAAACCCAATAAACAAAATCGTCGCAAAAGCGAGTTACCCTGCCCACATTGTGATAAAGTTTTTGATCGTCCTTACCGCCTGAAGCGTCACTCTGGCGTACATCTAGAGACACGTCCATTTTCTTGTGAAATTTGCAATTATCGTTTTACTACCGTTTATCAACTAGCGCGCCATAAAATTACTCATGAAGATGTTAAATCAGTAACACAATTGCCACCGCCCGAAGGTTATAAGTGTCCAGATTGTCCAAGACGTTTTGAAAAGCGTGAATCATTAGCAGCACACATACAAAGTCATCGCAAAACTGATCCAGGTCAAGTTTTCAAATGTGAGTTGTgtccaaaaaaatttcgaaaattcacaaCACTCTCCCAGCATGCACGTACACATCcagaaaaccaaaaatttaagtgtACACTTTGCGAAAAGGCATTTGGAGTGAATGCACATCTTATAGAGCATATGAACAAACACAATGGTTTGAAGCCATTCGTTTGTGACTATTGTAATAAAGcatttcttCAAAATAGCACACTTAAAGAACATCAGCGCGTACATACTGGTGAAAAGCCATTCCTTTGTTCACAATGCGGTAAATCTTTTCAAAATGCCAGCAATATGCGGCAACACCTGTTACGTCACTCTGACGAAAAACGTTATCAGTGTCCAGAGTGTCCCAGCAAGTTTGCATGCCAATCGGATCAAATCAAACACATGTCCACACATCGTACCGTCAAGCCGCATGTCTGTGATATTTGCGGTTCACGTTTTACGCGCTCGTATACGTTAAACAAACATAAACATATACATACTGGCGAGCGTCCACATAAATGCGATGAATGCAATATGACGTTTGTTTTCATTGAACACATGAGACGACACAAGCGCACGCATACTGGTGAAAAGCCctataaatgtaaattttgtgaaaaggctTATGCGGAGAGTGGCGATCTAAATAAACATAAGCGTACACATGTCGGCGAAAAAACCTACATTTGTGAAGAGTGTCCAGAGGCGTTTAAATATCAAATAGAATTGCGAGAGCACCAGCGACTTCATTACAAAAAGCAAAAGCAGGAAGCTGATGGTCAAATCTTGGAGCAAATGTGTCGCGCCTGTATGtgcaaaaatcaaaactttcactCACTGTATGATGAAGCTGCGGACAGGCCATTAACAATCTGTGAAATGTTTGCCACAACGTTACCACAGCTCCCCATTCATAGCAATGATGAGCTCTCCAAATTAATTTGTGTAACATGCTTGAACACACTGATCATCGTCCACAAATTTCAAGAAATGTGTATCGCATCGGACACATACATGCGAAGTTTACTAGCCAGCAGCAGACTATCATGTCTTGATACTAAGACGGAGCAGCTGGAGGAAATAAAGCATATAGGAATAGCGCAAGGTGTCGCCAAATTTGATTACATACCACTTGTGACGGACGATCCGTTACAATTGTCAGGCTcaataaaagtagaaaaaaattgtgatgCAGCAGAAGATTCGCATGACAATGAAAACAGTGATTCGGAATGGAGTGACGGTGATGACAGacCGTTAAAAGATATTACACCTCTGACGGGAGAGTTgcaaaattgcataaaatttgaaatcagtGAAGTGGAAGTACAGGAATGTGATACGAAAACATTTTTGGATACAAAAAGTGATACGGGCTATGACATGGGTACAGCTGCAGATTTGAGTGTCGGTGCTGTCAGGAAAGTTGGTGATGATGATATTACGATTACGGCTTCAGAATCTGATCACACAGACACCGCTTCAGAATGGAGTGCCGGTAGTGATAGtgACTATCAAGAAAAACCAAAGCAAAAATTACGCAAAAAAGAGGAACAACAGCAAAGCACATCCAGTATTATGGGTGAAACCgaaatatatgaaattgaaaaACCTCATTCCCAACCTCGTCGCAAATATCATTTTTGCTGTCATCTATGTGATGCTGGTTTTGCGAGCAACTACAAATTAAAACGTCATGCTCGGGTACATCTTGAGGCGAATTCATTTGTTTGCGAAACTTGTAGTTATCGTTATAAAACCAGTGGAGCACTTGCACTACACATTAATATCGCACATGAATTGTCACCGCCTGAAGGTCATAAGTGTTCAAAATGTCCAAGACGTTTTGAAAAACGTAAGTCATTAAATGCGCACATGAGTACCCATCGCAATACACTTTTGAAATGTAAGTGGTGCACCAAAAATTTCACGAAGTTGAAGACGCTGTTGCATCATGTACGCACACATCCAGAATCGTCTTCGTACTCTGTGTCTTTTAGCTCCTGCCAGAATATAGAGCCTCATCTAGAATACCAAGAAAGAACATTTGAACACGATGATGATTTCGAGTGGAGGGCCGATGATGATATtagGCCTTATTCACAACCTCGTCGCAAATATCATTTTCGCTGCCAAAATTGTAATGCAGGCTTTGCTAGTGACTACAAGCTAAAGCTTCATGCTCATTTACATCTTGAGTCGCGTCAATTTGCATGTGAAATTTGCAACTATCGCTATAGAACCGCTAAAGCATTGGCACTTCATAAACATACACACGAAACACCTCCATTAGATGGCTTTAAATGCCCAGACTGCCCAAGACGTTTTGAAAAACTTAGATCATTATCatcgcatttaaaaaaccatttCATAACTGATCcagaagaattttttaaatgtcgTTTGtgcccaaaaaaatttaaaaagttcataACACTAACGCAGCATGAGAGCACACATTCAGAAATTCAGAAACATAGCTGCAACTTGTGTGAAGAAGTATTTGAACTGAGTGCTCAACTTGAAGATCACATAAATAAGAGCCATAGCTTAAAATCTCTTAAATGTCAGTATTGTAAAAaagAGCTTAGAAACAAGTCTAGTCTTGAGATTCATGAACGCCAACATACTGATGAAAAACCATTCCTTTGTCCACAATGCGGTAAATCGTTACGAACTAAAAAAACTTTGAGTGATCACATGCTGCGTCACTCTGatgtaaaaacttttcaatgccCTGAGTGTCCTAGCAAATTTGCCTGCGACGTTGATCGACGAAAACATCTGCGAATACATCAGGGCACAAAGCCACATGCCTGTGACATTTGCGGTCAAAGGTTTTCTCGTCATGATTCgattaataaacataaaaaatcagttCACACTGGCAAGCGTCCATATAAATGTAGTCAATGTGATATGAGGTTTGCTGTCCTGAATTATTTGCACCGCCATGAACGTGTGCATACCGGTGAAAAACCATACAAATGTAAATACTGTGAAAAAGCTTATGCCGATAGCGGTGACTTGACTAAACATTTACGTTTACATGTCGGCGAAAAGACTTATATTTGCGAAGAATGtccagaaaaatttaaatattatacaGAATTTCGAGAACATCAGCGGTTTCATTAcaagcagcaacagcaagaGGTTATTGGTgcaaatgtaaagaaaaatattttggagaGCTAA
Protein Sequence
MSNSEQIAENMCRACMCKHQNFHSIYDEADKTVKICEMLATTIPQLLIHSNDQLPKLICIPCLNKLNITYQFQQMCIASDKHMRSLLLGLVENLSSNMGQQTETAHVTKLECNSIITEDFLKLQSCMKTEINADEVKELVLETCFEARTAKSEQILVESGEEYRLEDGISSEWSACDDSDYKGEKSTSKIKRAKQQLRASNIHNETGVDEIEKPNKQNRRKSELPCPHCDKVFDRPYRLKRHSGVHLETRPFSCEICNYRFTTVYQLARHKITHEDVKSVTQLPPPEGYKCPDCPRRFEKRESLAAHIQSHRKTDPGQVFKCELCPKKFRKFTTLSQHARTHPENQKFKCTLCEKAFGVNAHLIEHMNKHNGLKPFVCDYCNKAFLQNSTLKEHQRVHTGEKPFLCSQCGKSFQNASNMRQHLLRHSDEKRYQCPECPSKFACQSDQIKHMSTHRTVKPHVCDICGSRFTRSYTLNKHKHIHTGERPHKCDECNMTFVFIEHMRRHKRTHTGEKPYKCKFCEKAYAESGDLNKHKRTHVGEKTYICEECPEAFKYQIELREHQRLHYKKQKQEADGQILEQMCRACMCKNQNFHSLYDEAADRPLTICEMFATTLPQLPIHSNDELSKLICVTCLNTLIIVHKFQEMCIASDTYMRSLLASSRLSCLDTKTEQLEEIKHIGIAQGVAKFDYIPLVTDDPLQLSGSIKVEKNCDAAEDSHDNENSDSEWSDGDDRPLKDITPLTGELQNCIKFEISEVEVQECDTKTFLDTKSDTGYDMGTAADLSVGAVRKVGDDDITITASESDHTDTASEWSAGSDSDYQEKPKQKLRKKEEQQQSTSSIMGETEIYEIEKPHSQPRRKYHFCCHLCDAGFASNYKLKRHARVHLEANSFVCETCSYRYKTSGALALHINIAHELSPPEGHKCSKCPRRFEKRKSLNAHMSTHRNTLLKCKWCTKNFTKLKTLLHHVRTHPESSSYSVSFSSCQNIEPHLEYQERTFEHDDDFEWRADDDIRPYSQPRRKYHFRCQNCNAGFASDYKLKLHAHLHLESRQFACEICNYRYRTAKALALHKHTHETPPLDGFKCPDCPRRFEKLRSLSSHLKNHFITDPEEFFKCRLCPKKFKKFITLTQHESTHSEIQKHSCNLCEEVFELSAQLEDHINKSHSLKSLKCQYCKKELRNKSSLEIHERQHTDEKPFLCPQCGKSLRTKKTLSDHMLRHSDVKTFQCPECPSKFACDVDRRKHLRIHQGTKPHACDICGQRFSRHDSINKHKKSVHTGKRPYKCSQCDMRFAVLNYLHRHERVHTGEKPYKCKYCEKAYADSGDLTKHLRLHVGEKTYICEECPEKFKYYTEFREHQRFHYKQQQQEVIGANVKKNILES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-