Mpla008149.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- br
- Assembly
- GCA_963662105.1
- Location
- OY759208.1:127789631-127792704[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-16 9.6e-13 48.4 0.0 3 44 353 394 351 395 0.94 2 3 0.0081 17 6.0 0.0 25 37 422 434 403 440 0.80 3 3 7.7e-18 1.6e-14 54.1 0.0 3 42 462 501 460 504 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTTAAATGGATGGGACACCAGTCAACCATTTATGAAATACAGAAAAATCTACGCAACGATTCGCAAAGTTGTGAAGTGACACTGGCAGGCAAAGGCAAGTCGGTGCGAGCTCATCGTTTTGTCTTGTCCTCGTGCAGTGATATGCTGAGAGGAATCCTCGCAGAGATACCCATCGGACAAGAGGCCACCATTATGGTGCCGGACATCAAGGGGGCGCTTTTAGATAGCGTTCTTGCCTTCATTTACATGGGTGAGACATGTCTAAATTCCAATAATTTGTCTGAATTTTTGGAGGCCATCAATCATTTGGGAATTAAATCTGCTATAAGTTTTGAATGTAATACTGGGATGCTAACAAGCAGTGGAACTAGTAATGCAAACAGTGGTGATTGTTCATCGTCAAAAGGAATAACCAGCGCAATGCAAATAAATCAAGATGAAATTATTGAGGAGGAGCCAATGGCATCGCCCAAAATGGAGgAACAAACTGTTATGGACGGCGCTGATCAGCAGGCAGCAAGTGAATTAGAATTTCTTGATGTTTACAATGAGCCACAACAAAAAATCACTTACTCCATTGAGCACATGGCCGCTGCAACtacaaatgaatttattttaacagaGAACTCTGGCACTTTCACACTTACACAAAATACAAAACTGGACGATCCCAGTATGACAGAAAAAATAGAAGTTGAACCCGAAGAAGATGTTGATGATAGTCACATTCTAGAAGAATATAGCAATACCGCTGAGCCTATAATTGAAATAAGTACGGCAAACAACAACTCAGCTATCGCCGCCGCAGCTGGAAATGTTGTAAGTGTCGCCAAGCCAACTCTTATTCacttaaaaccaaaaataaaaattgagcgACGTACATCATCtcatcatcaacagcagcatcaccagcagcaacaacagcaaacagTGAATACCAGCACAGTCGTCGATACGGCAGCAACGTCATCAATGGCTAGCATTTTGAATACCTCCACTGATAGCTATTCATCCGGCGGTGGCTTTAATGACAGTCAATTGCGTGATGGAAACCTTGAAATGGCTGTGCAAGGTGTCCTCAACGAAGGAATGAGCCTGCAGAAGGCCGCccaaaaatataacatttcaaAGACAGTACTTTGGAGACGTGTGCGCAAGCACCCCATGTATATGAAAACAACACGTGAGAATCCACTATTGGAGGCTGCTTGTAATCGTCTCAGAAGTGGTCAATCGCTTAAGGTCATTAGTCAGGCACTGGACATACCAATGTCAACATTGCATCGTCATAAAGTGCGCTTGGCTCAACAAGGACGTCTGCCGGACTATATTTCATTTAAGAAGCGTGGATCCTTTTCAAAGGAGcaacttaaagaaaaactttcaaaagcAGTTCAAGCCTGTCTTCATGAAGGCATGTCGCAGAATCACGCCGCTAATTTGTACGAAATTCCAAAAAGTACGCTATGGCGGCATCTTCAAAAGCGTATGAGCGAAGCACAATTGCAATGTCTAGATGATGAAGAGGCCATTAAAGAGGAAATTATTTTATCCTAG
- Protein Sequence
- MNHLKWMGHQSTIYEIQKNLRNDSQSCEVTLAGKGKSVRAHRFVLSSCSDMLRGILAEIPIGQEATIMVPDIKGALLDSVLAFIYMGETCLNSNNLSEFLEAINHLGIKSAISFECNTGMLTSSGTSNANSGDCSSSKGITSAMQINQDEIIEEEPMASPKMEEQTVMDGADQQAASELEFLDVYNEPQQKITYSIEHMAAATTNEFILTENSGTFTLTQNTKLDDPSMTEKIEVEPEEDVDDSHILEEYSNTAEPIIEISTANNNSAIAAAAGNVVSVAKPTLIHLKPKIKIERRTSSHHQQQHHQQQQQQTVNTSTVVDTAATSSMASILNTSTDSYSSGGGFNDSQLRDGNLEMAVQGVLNEGMSLQKAAQKYNISKTVLWRRVRKHPMYMKTTRENPLLEAACNRLRSGQSLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSFSKEQLKEKLSKAVQACLHEGMSQNHAANLYEIPKSTLWRHLQKRMSEAQLQCLDDEEAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258134;
- 90% Identity
- iTF_00972372;
- 80% Identity
- iTF_00972372;