Basic Information

Insect: Megathymus violae
Gene Symbol: -
Assembly: GCA_003671415.1
Location: PDGT01000100.1:808495-810093[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.062 5.7 8.2 0.3 3 23 175 196 174 196 0.93

2 10 0.48 44 5.4 1.3 1 23 202 224 202 224 0.90

3 10 0.18 17 6.7 1.6 2 23 231 252 230 252 0.89

4 10 0.006 0.55 11.4 0.3 1 15 257 271 257 275 0.90

5 10 0.00023 0.021 15.8 1.3 2 23 298 320 297 320 0.96

6 10 4.9e-05 0.0045 18.0 2.7 1 23 327 349 327 349 0.98

7 10 3.7e-06 0.00034 21.5 5.4 1 23 355 377 355 377 0.98

8 10 7.4e-05 0.0068 17.4 3.7 1 23 383 405 383 405 0.96

9 10 5.8e-06 0.00053 20.9 4.5 1 23 411 433 411 433 0.98

10 10 2.1e-07 1.9e-05 25.4 0.7 1 23 439 462 439 462 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.062	5.7	8.2	0.3	3	23	175	196	174	196	0.93
2	10	0.48	44	5.4	1.3	1	23	202	224	202	224	0.90
3	10	0.18	17	6.7	1.6	2	23	231	252	230	252	0.89
4	10	0.006	0.55	11.4	0.3	1	15	257	271	257	275	0.90
5	10	0.00023	0.021	15.8	1.3	2	23	298	320	297	320	0.96
6	10	4.9e-05	0.0045	18.0	2.7	1	23	327	349	327	349	0.98
7	10	3.7e-06	0.00034	21.5	5.4	1	23	355	377	355	377	0.98
8	10	7.4e-05	0.0068	17.4	3.7	1	23	383	405	383	405	0.96
9	10	5.8e-06	0.00053	20.9	4.5	1	23	411	433	411	433	0.98
10	10	2.1e-07	1.9e-05	25.4	0.7	1	23	439	462	439	462	0.98

Sequence Information

Coding Sequence: ATGAGTGACACAGAAACAGCGCAATGTCGCTTTTGTGCGAAAACTAAACCATACGGAAAGCTCGTTAATCTTCAAACTGACGAGGACCGACGACGAAAAGTTGTGGAGAAGTTGATCCGTCTCTCTTTAGAAATTGCTAATTTTAATTCACCTCGCGATGCCTTACCCAAAACTGTATGTTTTCCGTGTATGGAATCATTGGATAATGCATTTCAGTTTGTATTACACGTTGAGGCGTCTCAGAGTGAGTTGGGTGCTTTAAGTTTAGTTAACGTTAAACAAGAAGTTCCCAACGATGGTTATACTAGTTCAGAAGAAGAAAAATGTGGAGAAGCAATGGTAAAAATAGAAGTTGAAATTAGCCATGAAGTGGCAACACAAGTTTCTAAAATAAATAGTAATAAGGAAATACTGAAGGAAGATAGTATTAAGAGAGAAACAGAAAAGGAACAAGACAGAGACAACTTAGATAAGAAACCCATAGCAGAATTACAGGTATCATGGCAAGATTACAGTTGGCTTTGTGCATACTGTGATGTGATATTCCCTAGTATTCATGAGCTGAAAGAACATTCCATGCAGTCTCACGGTTGTTGCAATCCTTACAGATGTACCGACTGTAAAGTCAGAAAATTAAACTTAGACAATTTTGTTAATCATGTGAGAAAACACAGAAGCAATCTAAAGTTATCTTGCTACAAATGCCACATGATATTTTCTAGACAATATGATGGTATTATACATAAAAAAGAACACATTATTACAGAATTTAAATGTCCAGGATGCAATGAAACATTTGCAACAAAGGAACAATCTGTCGAGCACTGCACTAAATACAATAAGGATAAGAAGATTCGGGAAGTACCTCCTGAGCATATAACAGACGATCTTAAATGTGTGTTTTGTCAGAAACAATTTAGATACAAAGGTGGTTTAACAACACATCTCTTGACACAGCATAGAGAACAAAAACGTGATCATACGTGTGACAAATGTGGAAAGTGTTTCCTTAACAAAGCTAATCTAGCCGGGCATATGTTAATGCATGATGATATAAGACCCTATGTGTGTGATATATGTAAACATTGCTTTCGTCAACGGTCACAACTGAGCAGACACATGGGTACCCATGATGGCAAGAGACCGTTCACTTGTGAACAATGCGGAAGATGTTTCAGGCTTAAAAAACAGCTCAGGACCCACAGTATAGTTCATACGGATAAATTCCCTTACATCTGCACTTACTGTAAGAAAGGTTTTAAACACAAGTCCACGTTCATACAACACATACGTCTACATACTGGCGAAAGGCCTTACAAGTGTGAGGTTTGTCCTAGAGAATTTACGAATTGGCCAAATTATAATAAACATATGAAGAGGCTTCATGGCATGAACATGGCAAAAAATCAGCAGTCATACGAGGGTTTCTCTCCTATGGATCCAACATCAATTAAATTAGACATGGAACTGGCAACTGATTTGAATATGAAGACCAAAAATAATTTTGTTCCTAAACGTAGAGGGAGACCAAAAATCATTAGGAACACTGAAAAAACAATTCCTCTCAATGAAATTAAAAATGAAGTTGCAGAATGTTAA
Protein Sequence: MSDTETAQCRFCAKTKPYGKLVNLQTDEDRRRKVVEKLIRLSLEIANFNSPRDALPKTVCFPCMESLDNAFQFVLHVEASQSELGALSLVNVKQEVPNDGYTSSEEEKCGEAMVKIEVEISHEVATQVSKINSNKEILKEDSIKRETEKEQDRDNLDKKPIAELQVSWQDYSWLCAYCDVIFPSIHELKEHSMQSHGCCNPYRCTDCKVRKLNLDNFVNHVRKHRSNLKLSCYKCHMIFSRQYDGIIHKKEHIITEFKCPGCNETFATKEQSVEHCTKYNKDKKIREVPPEHITDDLKCVFCQKQFRYKGGLTTHLLTQHREQKRDHTCDKCGKCFLNKANLAGHMLMHDDIRPYVCDICKHCFRQRSQLSRHMGTHDGKRPFTCEQCGRCFRLKKQLRTHSIVHTDKFPYICTYCKKGFKHKSTFIQHIRLHTGERPYKCEVCPREFTNWPNYNKHMKRLHGMNMAKNQQSYEGFSPMDPTSIKLDMELATDLNMKTKNNFVPKRRGRPKIIRNTEKTIPLNEIKNEVAEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00970645;
90% Identity: iTF_00970645;
80% Identity: iTF_00970645;