Mvio010538.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000030.1:4114954-4118456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.085 7.8 7.8 0.3 5 23 351 369 350 369 0.96 2 11 0.0052 0.47 11.6 0.4 3 23 377 397 375 397 0.94 3 11 0.97 89 4.4 0.3 2 23 405 426 404 426 0.91 4 11 2e-05 0.0018 19.2 3.3 2 23 431 452 431 452 0.98 5 11 0.0029 0.27 12.4 4.1 1 23 458 480 458 480 0.99 6 11 0.00011 0.0098 16.9 0.6 1 21 484 504 484 505 0.94 7 11 0.00013 0.012 16.7 0.1 1 23 538 561 538 561 0.96 8 11 8.4e-06 0.00076 20.4 0.3 1 23 583 605 583 605 0.98 9 11 0.0001 0.0095 16.9 3.4 1 23 611 633 611 633 0.98 10 11 0.0024 0.22 12.7 0.3 3 23 641 661 639 661 0.98 11 11 1.6e-05 0.0015 19.5 0.8 1 23 667 690 667 690 0.96
Sequence Information
- Coding Sequence
- ATGGATTCCTGGTCGAATTTGTGTCGTTGCTGTCTATCCCCAGATGCGGGGGTGTCATTGTATGACGAGAAGCAAAATGTAAAAGAAAAATTTCAGGAACTAACAACTCTTGAGCCAAACAAAGATGATGGATTACCACAGAAATTATGTGTGGACTGTTTTTCTATACTAAATTCAGCATACCAATTCAGAGTACAATGTATGAAGATGGATAAAGAACTAAAACTTCAACTGGTTGCTTTAACAAAGCAAACGAAAGACGAGTTCATTCTCAATTTACCTGAAGTCAATGAAAAAGGCAAAGACTTGACCATTGATGATATAGCCAAAGAATCCCTGAAGCAAATTGAAGCAATGATCAAAACTGAACCTAATGATAGTGATGATGACTGCTATTATGTACTCGTAATTGATGATCCAAAAGATAATGATAAAGAAAAAGGGACTGATGTACGTACAATAAAAAATGAACCTCATGAAATACCTATTGAACAAAACTATATTGAACCGGAACAAGGGACTCCAACTTTTGAAAACAGCATTGATTCCTTCATAATAACACATCCCAGAGCACCACTCAGTGTACCTGCAACCATTCTTGAGAATGAGGAAGAATATCAGGAAAACGAGGAAACAGTGATGAATGTTGATGATGCAGTTGATGAAACAACACAAGATCAAATTTTAGCAGAAATAGATGACTCCCAGCTCAGCGAACATCAGCAGTTGGTGCATCTTGGAGATGACATAATTGTAAAAGATATATCTAGCTCTAAAAATATTATAAAAATATTAACCACTTCAGGTACAGAACGCACTATACTCCTTGATAGTAATGAAAGCATCAAATATCTTACAGATTCCCAGTTGGGTACTGTTGAAGATGAGGATTCTATGACTCATGAAGAACTAATATTTTATGATGCTGATGATACATCTCAATTTCAAATACTGAAGTGTGATGGCTCTGAATTAGTGATTGAATATGCTGACGAAAGTCAGATAACTCCAACGGCAGTCTTAAAACAAGAGGATGGTACATACTTATGTGGTTGCGGTGAAAAATTTGATGATTTAGAGCTCTATGAAAAGCATAAGAGTAAGCATAATCCAGGAGGGGAACATTTATGTAACCTTTGTGGTAAAGGATTTGAAACCTCTGAGATTCTAACTGGACATATGCTTCTACATACAGTGACTGGAACATTTGTCACTTGTCCATTCTGCAATCAACTTATCAGAAGAAATGCTCTCACACAGCACATTAAATATGGACACAATAATAAGCCACGCTGCAACTTATGTTTAAAGACTTTTGCAAACCACAATAATCTAAAACGACACATGATGATTCACACAGGTATCCGGGAGTTTCAATGTGATATCTGTTTAAAAAGATTTCATCAAAAAATCACTATGCAAACACATAGGCTAACGCATATTAATCCCTTCTCTTGTAACCAATGTGATAAAACATTTGAAAACAAAACTGCCTTGTTAGAACATAAGCAGTCCGAACAGTGCAGCAAATCTAAAGTCGCCAAAGTTAAGGAAGAATTGATTAAGACAGTTAAGCAAGAAATCACAACTGATACTGGGAAACTTTTGGGTTATGCATGCTCACTTTGCAAAAGAATGTTTTCTGTGGAATCAGCCTTAGAGCAACATATCGAAAGTTCACACATGGTTGAAACAGTTGACATACAAAACACAGATAAGAATGTACGTGGAAAACATTTCAAGAGATTTGAATGTAGCATATGTGGGAAGAGTTGTGCCAGTCAAGCAATGCTTATTATGCATGAGAGGGTACACACTAATGAAAGACCATATCCCTGTCAGTTATGTGCCTTGAGATTTAAAACTAAAACACATTTACGAACACACCAGCTTACTCATACTAGGGAAAAGAAGTTTGGTTGTTCAGTATGCATGAAGTTCTTTGCTTTAAAAGGAAACTTGGTTGTGCATTTAAGAACACATACAGGTGAGCGACCATATGTATGTTCTCTGTGTGGGGAAGCTTTCATTGACTCAAAATATCTCAAAAAGCATAAGTTGAAAAAGCATTCAATAGATAATGTTCCCTGGAATAAGTATGTTTAG
- Protein Sequence
- MDSWSNLCRCCLSPDAGVSLYDEKQNVKEKFQELTTLEPNKDDGLPQKLCVDCFSILNSAYQFRVQCMKMDKELKLQLVALTKQTKDEFILNLPEVNEKGKDLTIDDIAKESLKQIEAMIKTEPNDSDDDCYYVLVIDDPKDNDKEKGTDVRTIKNEPHEIPIEQNYIEPEQGTPTFENSIDSFIITHPRAPLSVPATILENEEEYQENEETVMNVDDAVDETTQDQILAEIDDSQLSEHQQLVHLGDDIIVKDISSSKNIIKILTTSGTERTILLDSNESIKYLTDSQLGTVEDEDSMTHEELIFYDADDTSQFQILKCDGSELVIEYADESQITPTAVLKQEDGTYLCGCGEKFDDLELYEKHKSKHNPGGEHLCNLCGKGFETSEILTGHMLLHTVTGTFVTCPFCNQLIRRNALTQHIKYGHNNKPRCNLCLKTFANHNNLKRHMMIHTGIREFQCDICLKRFHQKITMQTHRLTHINPFSCNQCDKTFENKTALLEHKQSEQCSKSKVAKVKEELIKTVKQEITTDTGKLLGYACSLCKRMFSVESALEQHIESSHMVETVDIQNTDKNVRGKHFKRFECSICGKSCASQAMLIMHERVHTNERPYPCQLCALRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHSIDNVPWNKYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00887630;
- 90% Identity
- iTF_00970631;
- 80% Identity
- iTF_00970631;