Mvio013664.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000029.1:3588655-3593490[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.3 27 6.0 0.3 2 23 63 83 62 83 0.91 2 12 9e-05 0.0082 17.1 0.1 1 23 89 112 89 112 0.96 3 12 3.6e-08 3.3e-06 27.8 2.0 1 23 118 140 118 140 0.98 4 12 0.00013 0.012 16.7 0.0 1 23 146 168 146 168 0.98 5 12 4e-06 0.00036 21.4 0.4 1 23 174 196 174 196 0.98 6 12 0.00074 0.068 14.3 1.6 5 23 205 223 202 223 0.96 7 12 0.0016 0.14 13.2 1.1 2 23 487 509 487 509 0.96 8 12 8.8e-06 0.0008 20.3 0.9 1 23 515 537 515 537 0.96 9 12 1.8e-05 0.0017 19.3 1.1 2 23 544 565 543 565 0.96 10 12 0.00086 0.078 14.1 1.5 3 23 573 593 571 593 0.96 11 12 7.6e-05 0.0069 17.4 3.1 1 23 599 621 599 621 0.98 12 12 0.00051 0.046 14.8 2.5 1 23 626 649 626 649 0.94
Sequence Information
- Coding Sequence
- ATGTCACTGGAGTCTAGTGAATGCCTAAATTCAGCATCGTCTCTCATTGAAATCGAGGAAGATCCAAAATGCTCGATCGAGAAGCATAAAACAATATGTGCCCAATCATCGAAGGATGAGTTTAAGGAGGCCGGGATCACCGAAAAGCCAAAAGTTGTCAGCAATGCCAACGGAAAACGATATGTGTCGTGCGACATGTGCAAGAAGATCTTGGTGACAAGCTCGTGGCGACGGCACTTGCGCGCGCACTGCGGCGATCGGCGCTACAGCTGCCACGCGTGTGGCATGGCCTTTGGCGACAGCGGGAACCTAGCAAGACACGCCCGCGCTCGACATGCGCGTCTTCGCCCTCATGTTTGTCCCGAATGTGGTCGCGCCTTCGCCCGTAAGACCCATCTGCAAGACCACATGCGTTCACACCGCGACGCTCGCGACTACGTCTGCGAAGTCTGTGGAAAAGCTTCCAAGTCTGCTGCAGCGCTTCGCATGCATGCAACGACTCACGCCACTCCTTACAGGTTTCAATGCATGGAATGTGGATCGAAATTCAAGCGAAACGGGGAGTTAAGGGCGCATATGACGATCCACACAGGTGAACGAGACCACCAGTGCGGGTGCGGTAGAGCCTTCCGGTTACGCAGCCAGCTTACCGTCCACGCCAGGACCCATGACGTGAACCCGAAGATCGACCAGTACGTAGACGTCGGCACTGATGTACCGGAGTTGCCCGTGCAACGCACCTGCAGCCGCTGCGCTCTGACGATGCCCGCCAAGCAGTACAATGCACACCTCGTCAGCCAACACAATGCAGCAATATTTCGCTGCGAAGAATGTCACTCATACCTAGACAAGGACGATCTCATTTTCCATATGGAACAACACGCCTTCGACCGTCTCTCGGAGGAGATGAAGGCTGAATATTATAAAAATGAGGAGACTATTCTGGCAGAAGAAGCGAGAATCGACGCACTGGCCCAGATCGAACTAGATAAACTTAGGGAATACTTCCGCCGAAAGGAGGAGGAGGAAGCCAGACAGCGCGTACAAGCGGAAATGCAGAAAAGCAAGTCGGATAACAATACGAACGGTCATGAATCGAAAGAAATTAAAAGAAAAGCCGAGAGAGCAAGTGACGGCACACAGTCGACAAAAAAGAACAACTCCAAACGTACGAGCGCCGAAGATTGTCCGGAACGAGATACCGAAATAGAAATTTCACCCCTGAAGCATAAGAAGGTCGAATCGAAGCGAATATCTGACGCAGCGTCCTCGCCGGCAAAGCGACAGAGGAAGATGAGAGCTCTCATCGCTAAAAGCGGATTGCGTGAAAAGCAGTCCTACTTCCGCGACGGTGGGAATGTCGGCGATGACGAGGTCAACAGTCCCAAGTCCTCCCCGAACACCAAAGCTATTGCGATCAAGGATGAATTCTCCAATAAGTCTCCCAAAACTTCCCGGACATGCCCCATCTGTAGCAAACAGTACCGCGCTTCCTCCAGCTACTTCTATCATATGAAGTACTTCCACAAGCGCAGCCGCGATCACGAGTGTCCCGTTTGTAAAAAGAAGTTCGGCACCAAAGCTAACCTGACGCAGCACGCAAGCATCCACACGGGCGCGTACAACCTTGAGTGCAAGAAGTGCGGCAAGCGGTTTAAGTCGAAGCCGAGCCTCTACATCCACGAGCAAAGTCACGACGGACCAAAGCGCTGGGCGTGCACACAATGCGGTCGCTCGTTCCGCTGGCGCACCCACCTGGCACGCCACGTGACGCGACATGCTGCTGAACGTGCGCATGTTTGTACCACATGCGGCCGCGGCTTCAGCGTGCGGTGCGATCTGCTGCGCCATGCACGCACTCACACTGCCGACGAGTACCACTGTACGACGTGCGGCCTAAAGTTTGCGCAGAAGCGCTACCTACAGGTGCACGTCGTTAAGAAGCACCCCGAGGTGTCGCCGTCGGAGCCGATGGTGACGCGCTCCTGA
- Protein Sequence
- MSLESSECLNSASSLIEIEEDPKCSIEKHKTICAQSSKDEFKEAGITEKPKVVSNANGKRYVSCDMCKKILVTSSWRRHLRAHCGDRRYSCHACGMAFGDSGNLARHARARHARLRPHVCPECGRAFARKTHLQDHMRSHRDARDYVCEVCGKASKSAAALRMHATTHATPYRFQCMECGSKFKRNGELRAHMTIHTGERDHQCGCGRAFRLRSQLTVHARTHDVNPKIDQYVDVGTDVPELPVQRTCSRCALTMPAKQYNAHLVSQHNAAIFRCEECHSYLDKDDLIFHMEQHAFDRLSEEMKAEYYKNEETILAEEARIDALAQIELDKLREYFRRKEEEEARQRVQAEMQKSKSDNNTNGHESKEIKRKAERASDGTQSTKKNNSKRTSAEDCPERDTEIEISPLKHKKVESKRISDAASSPAKRQRKMRALIAKSGLREKQSYFRDGGNVGDDEVNSPKSSPNTKAIAIKDEFSNKSPKTSRTCPICSKQYRASSSYFYHMKYFHKRSRDHECPVCKKKFGTKANLTQHASIHTGAYNLECKKCGKRFKSKPSLYIHEQSHDGPKRWACTQCGRSFRWRTHLARHVTRHAAERAHVCTTCGRGFSVRCDLLRHARTHTADEYHCTTCGLKFAQKRYLQVHVVKKHPEVSPSEPMVTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00970598;
- 90% Identity
- iTF_00970598;
- 80% Identity
- iTF_00970598;