Basic Information

Insect: Megathymus violae
Gene Symbol: -
Assembly: GCA_003671415.1
Location: PDGT01000001.1:6444941-6454424[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0067 0.61 11.2 1.5 3 23 713 734 712 734 0.96

2 23 0.026 2.3 9.4 0.6 1 22 1111 1132 1111 1132 0.95

3 23 3.5 3.2e+02 2.7 0.4 1 22 1174 1195 1174 1197 0.82

4 23 0.025 2.3 9.4 0.7 3 21 1208 1226 1206 1227 0.94

5 23 0.45 41 5.5 0.1 2 23 1235 1257 1234 1257 0.89

6 23 0.0057 0.52 11.5 0.1 3 23 1278 1299 1276 1299 0.96

7 23 0.0027 0.24 12.5 3.1 1 23 1305 1328 1305 1328 0.95

8 23 0.12 11 7.3 0.0 1 23 1355 1378 1355 1378 0.90

9 23 0.018 1.6 9.9 3.4 1 23 1383 1405 1383 1405 0.97

10 23 0.0062 0.56 11.4 0.2 1 23 1411 1434 1411 1434 0.95

11 23 0.0022 0.2 12.8 1.3 1 23 1447 1469 1447 1469 0.97

12 23 0.00017 0.015 16.3 1.8 1 23 1520 1543 1520 1543 0.97

13 23 0.0041 0.37 11.9 1.6 1 23 1607 1630 1607 1630 0.96

14 23 0.00089 0.081 14.0 2.0 2 23 1654 1676 1653 1676 0.95

15 23 0.0046 0.42 11.8 0.1 2 23 1682 1704 1681 1704 0.95

16 23 0.0094 0.86 10.8 0.2 1 21 1747 1767 1747 1768 0.95

17 23 0.0012 0.11 13.6 0.6 1 23 1778 1800 1778 1800 0.93

18 23 0.00025 0.023 15.7 0.4 2 23 1891 1913 1891 1913 0.93

19 23 1.7e-07 1.5e-05 25.7 1.1 3 23 1920 1940 1919 1940 0.98

20 23 0.01 0.92 10.7 0.2 1 23 1959 1982 1959 1982 0.92

21 23 0.059 5.4 8.3 0.0 1 23 2009 2031 2009 2031 0.98

22 23 0.013 1.1 10.4 1.0 1 23 2037 2060 2037 2060 0.95

23 23 6.1e-05 0.0056 17.7 0.3 1 23 2068 2091 2068 2091 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0067	0.61	11.2	1.5	3	23	713	734	712	734	0.96
2	23	0.026	2.3	9.4	0.6	1	22	1111	1132	1111	1132	0.95
3	23	3.5	3.2e+02	2.7	0.4	1	22	1174	1195	1174	1197	0.82
4	23	0.025	2.3	9.4	0.7	3	21	1208	1226	1206	1227	0.94
5	23	0.45	41	5.5	0.1	2	23	1235	1257	1234	1257	0.89
6	23	0.0057	0.52	11.5	0.1	3	23	1278	1299	1276	1299	0.96
7	23	0.0027	0.24	12.5	3.1	1	23	1305	1328	1305	1328	0.95
8	23	0.12	11	7.3	0.0	1	23	1355	1378	1355	1378	0.90
9	23	0.018	1.6	9.9	3.4	1	23	1383	1405	1383	1405	0.97
10	23	0.0062	0.56	11.4	0.2	1	23	1411	1434	1411	1434	0.95
11	23	0.0022	0.2	12.8	1.3	1	23	1447	1469	1447	1469	0.97
12	23	0.00017	0.015	16.3	1.8	1	23	1520	1543	1520	1543	0.97
13	23	0.0041	0.37	11.9	1.6	1	23	1607	1630	1607	1630	0.96
14	23	0.00089	0.081	14.0	2.0	2	23	1654	1676	1653	1676	0.95
15	23	0.0046	0.42	11.8	0.1	2	23	1682	1704	1681	1704	0.95
16	23	0.0094	0.86	10.8	0.2	1	21	1747	1767	1747	1768	0.95
17	23	0.0012	0.11	13.6	0.6	1	23	1778	1800	1778	1800	0.93
18	23	0.00025	0.023	15.7	0.4	2	23	1891	1913	1891	1913	0.93
19	23	1.7e-07	1.5e-05	25.7	1.1	3	23	1920	1940	1919	1940	0.98
20	23	0.01	0.92	10.7	0.2	1	23	1959	1982	1959	1982	0.92
21	23	0.059	5.4	8.3	0.0	1	23	2009	2031	2009	2031	0.98
22	23	0.013	1.1	10.4	1.0	1	23	2037	2060	2037	2060	0.95
23	23	6.1e-05	0.0056	17.7	0.3	1	23	2068	2091	2068	2091	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCTATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCATCAAAAATAAGGGACTGTGTTTCCGTACAGATAACGGAGAATGACGATCTGCCTACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATATTTTTAAGGAAGTGTGTGAAAGGACACAAAACAAGCTACAGTCTTTGAGTAATAAAGATGGCAGCCTACTAGAAGAGATTAATGTGAAAAATGAGCCTTTGTCAGATGAGGCCTATGATGATGGAGTGGTAATTGATGGCTCCTATCCTGATAGTGAGAATGGTGGTACAGTTAACAAATTACAACCAGAAGGACCACCAATCTTGGCATCTCTGGGGCTCACACCGAGGAGTGATAAGACATATGTAGATCCTCGCATGGATTGGCATCGAGTTCATGCCATTATGAGCTTAATTCAAGATGATGAAGCTATTGATTCACTGCAATCCATAGAAGAGTGTGATATTGTACATCAATCAGATCATGATTCAGACTCGGATGTAGAATTAAATGATGATATTACTGATGATTTTATTAATTGCAAAAATGGCTTCTTGCTTAAGAACAGGAAATACTTATCGAAATATCCAAAATTGTCATCATCTGTGAATTATGCAAAAGCAAAGGCAGTTGTACAATTAAGAAAACGCAATGCGAACCTGTTAAGACACTATCCACACCCCAAAAATGCTTGGCAATTGTTTTTCACAGATGATTTGTTGGAACTTATTGTGGCCTCTACTAATGAAAGAATTAGTACAACTCAAAAACAATCATTTCAATCTACTGATGTTAATGAAATTAAGACACTTATTGGTATATTATATTTACATGGAATTATGAGACCAACTCATCAAAAATTCACTGATCTATGGCATAGAAAGTTGGGGATTCCTGGTATTCAGAGTGCCATGAAACTTGACAGATTTAAATTCCTCCTTCAGAATTTAAGTTTTGATAATGATCATTGCAATAGTATTATACAGTTTGACATAATGAAAAGATTTCGTAAGGTGTTTGAAATATTTGCTTTGAATTGTAGAACTGCATTTGAAGTTAAGGATATTACAGTTGTTGATGAAATAATGATACCAGTCTATGGGCCTTGTCCATTTCGATACGTGATTGACAGAAAACCATTTAAAACGGGAGTCAAAGCGGTTTTGGCAGTTGATTCATCAACCTTTTATGTTACCAACCTAGACATTATCACAGACAGATATTTTGGAGCGGACGATATTGTTAAAAAGTTAGTTCAACACTTATCGGGAACCGGAAGATCTATTCTTGTGGATAGTTGGTATACTTCTTTGAAGCTAATTGAAATATTGAAAAATGAGTACAAATTGTACAGTATAGCAGCTCTTAATCCAAAAGATAACATAATTCCACCGTTGTTCCTCTCCAAACACAGAATAAATCAACCATTCATGAGTGGATTTCTGAACAACGATGTGTCATTGTCATCATATGTTAATGAAAAATTACAGTGTGTGAATGTTTTGACAAGTGAACCCAGGTTTTATAAAAGAGGTCATTCCAATCAAACTACAGTAATTTCGTTATATAAAAAGAACCGTTCAACGGTCAGAGTTTTGGATGTTCTAATGCATTATTATACAACTGCCCAACATACGAACGATTGGACTATATCCTTGTTCTTCACACTTTTGAACATCGCTACTGTCAATGCCCAAGTTGTATGGAGTTCCTTTAACTCTGAGAATATTATACAGCGCCGCGGTTTTATTAAAGAACTGGCTCTCAGTCTCTTGAACCAAGATGATGCTCCTTTACTTATGTCTGAAATCATGATTCAGAGGAAAGAAATAGCACGCACTCAAGATTCATATTACAGGAATAGAAAGAGGTACAGCGACAAGGACGAAGAAGACGAAGAAGAAGATGAAGAGATGAACGAGTCCCAATCTTATGCACCAATCGTGAACGTTCCTAATATGCCTGAAGTTTCCATCACCGTCATGCGCCCCACGGGTGAAACTTTACACGCACGTCAAGGTATCCAACAACTCGCATCCAAAGACTGCCTCGTTTGCGGTCGATCATATCGATACTCCCATAATGCAAGACGCCATGAACTTACTTCACATGGCTTCGATAGATACACAAATAAAACAACACACAAGAAAACCTCATCGCACCTGCAACCAAAACTTAGGCCTAATCCTTTTAATCCCAAAGCGCGGTTGATGCCTAACCCTATAAGTCATAAAATGCAACTCCTCCCGAAGAACATTCCTACCAAAATTCCACAAAAAACTATCACTCCAGCAAAACCAATCCCCATCAAAACTATAAAACCACCTCAAAATAGTTTACCATATCCCTTGCGCATCAAAGCATTAAAAGATTTACAAATTAAAAAGAAGGAACCTCAAATATTGAAAACACTTCTAACAACAAAGCCTGAAGTACTAATCTCGGAACCAGAAATAATTAATTCTGGCCCAGAGAGCCCCGAAACATTAATATCAGAACCAGAAATAGCATCTTTTCAAGTAGAGGCTATTCTGTCCGAGCCTGATGGTTTTGTGAATCAACACGACGAGGATATGGACCCAAATCAATTTAAATCAAACAATCATGGTCAAAACTATGACACTGTCGATATGGATACTGATAATGAAATTGAAATCGCTCGCCAACAAGAAAATGAGTGTGAAGATGAACAACTAGAAAATGAAACGGACAATAATGTAGATAACGTCAATGACCAAGAAAATACAGCAACAGCTCACAGCGATAATGAGAAACAAAATCAAGTGGAAGGTGAAATTAAAACTGAAGATGGAATTGAAAATAACGTTAGCAAAAATGATGATCTAACAAAAGAGGATGAAGACAGAGAAAATGATGACCAAAACCATCAAGATGAAAATTTTGAAGACGATGATGATGAACTACCACCGGTGAGTCTAGCGCCTGTTGTAGAGATCAATGAAGATATGCAAAATAATTCCTACAACAGTGAGTTAAATGAAGAGGAAGAAGATTTTGAATCAGCCGATGCTAATGACACAGTAGATGGAGATGAAAATATGAAAGAATTGGATCCTAATAAGGTCTACGTCACAAAAATGCAACGTGATTTCATTGTTAAATATCGTGACATCATTGAACAAATAAATACAAAAAAATGCCTTTGTTGCAAAAGGGAACATCCACGGAGAAAAGCAGTCATCCAACACTTACAAAAGAATGGCCACAAAGTACCTAAACATACTTGTTACAATTGCGTGATAACTTTTAGTCACATAGGAGCATTACTTAGTCACATGAGGTCTAATACATGCACTGATTTATGGAAAATAATATACAATGAGAATGGAATTACCGATGATCTTGTTTTGGAAGATGAACCGAAAGATCCCAAAGTTCAGTACAAAGACATATTTAATGCTAGATCTTACTCTTGTAAACTGTGTCCAGCCAAATTTCAGTTGAAGCAATTTATAATGAAACATGTCTTGGATGTTCATGAAGATAATCAATCCAAAGTACATTTGGCTTGTGTCCACTGTGGATCAAGATTCAAAGATACGAAGTTGTGGAAAAAACACATTCGAAATGGCGAATGCACTGTGTATATTTCGTGTGACTTATGCTCAGAAAAATTTGTCAATATGCAAGACTTTAACGATCATGCTTTAGCCGTACATGCGGGCAATTTTGATTTGTCTGATAGCCATAGCAAATGTGTTGATGGCCGACCAACGGATTGCCCTATTTGTGGCAAAAAGAATAGCAGCTATCCTAATTTGGTCAAACACTTGAAGATTATTCATAACGAGGAAACGCCTCACTACTGCCAGCATTGCGATTCCAAATTCGAACAAGCTGCCGATCTCAACAAACACATTTACATGCAACATTCCGATAGGTCTTTGGGTGTACAAATTTCAACAGAACCCGACATGTCCCTTGTCAAAGAAGAAGCAGAAGAATATCATTACTCTTGTACAGAATGCAATGCCATTTTCGAGACGGTGGATGCTTGGACTGATCATCAAGTGGCTGAACACAATCAAGTTGCTCATCATTGCGATCAATGCGAAAAGAAATTTTTGAGACCTTCTGAGCTGGCCGAACATAAAAATACACATTTGCGTGTAAAATTTTATCCTTGTAACATTTGTTCCAATTCGTACAGTACTCCTCAAAAGCTCTCTGAACACGTCCAACAGGTTCATCCCGGGGCAGGAGGATATAACTCTATGGATGCTGAATTTTTCTGCGACATTTGTATCAGATCATTTAAAAGCCGCCAGGCATATTCTAATCACATGCGCATACATTCTAAAGTACCGACTACTAACAGAAAGCCTGGAGAGCCTAGTTCTAAAGGATTCCCTCCTCAAATAATTGGAAAGCCTATACGACATTTTTCTATGGTCCAACCAAGCTTCTTGTCATTCAAGCCAAATTGTAATGTTCCTAACGCACCATACTCGTGCGATATATGTGGCAAAGGTTTTATGCATAAGAAAAATATATGGAAACATAAAAAAGTTTTACATGCTGATTTAATAAACGATAGAAATGACAGTGAAGAGAATACAATGGCGGCGTCAACAGAAGAAGATGACTACAATATGGATGAAAATGGCACCATTTTGTCTACGCCGCAGTTTAACAGTTTCAATTTTACAAATATGACAAATAATGTACAGCAACAGCCGCAGCCGCCTGCACAAGATCCCATGCCTTATTCTTGTGAATTGTGCTACAAGAGATTCCCTCTTAGAACAAGTTTGTGGAAACACAAACGCGCCAAGCATGGAATAATTAACGCCAGCGCTATTGGACCTGATTCTCAGGGACCGACTAGTGAATCGTCGGGTCGGTCGAGTTGTACTATATGCAAAATAAGTTTCTCTGACAAGAAGTCCTATTATCGTCATAGAAAAAATGTCCATAAGTCTACCGTGCAGATGTGTAAGATCTGTGGTAAACCGCTTAGTTCCACAGTCGAGCTTTATGAGCATCTAAGGGCTGCTCATGCACAAGAATTGTTGGGCTATAATGCTAGCCAAGGACCTAGCAAACAAGAAATGGGGCAAGAAATGGAAGCTGATTATGAACAAGATCAGGATTCTATGGATCCTAATGCCGAGTATCAGGCGCGATACCCTTGTGACACATGTGGAAAACAATTTGTAGGACTTCTTGCGTTGCAAAATCATCAATGCATCAACCAGATGCAATCGCAACCGCAAACTTTTGACTGCGAGATTTGTCATAAGAGTTATACATCTATCGCCGCGCTTAAGAGCCATCGTGGTTGGCATTTACGTTCACCCGATGGTAAAGCCGCTGCTAATAATTCTGGACTGTGGATGCCGCAGCACAAAGTTACAAGCAAAGTGAGTAAACATGAAGTAGTCGATGCTTCTCAACTGGCCAAGGTTCAACATTCAACTCCGGTGAGTATTGCTGCGAAACGAAGACTACCACCAGAAGTGGAGGTAACCGTGGTTAACCCGAACAAGAAAATGCGATCGGATGATTCCGTAGAAATGGATCAGCAAAATAATTCATCCTCAGGCGTAGACGACAGGTATTGTAACTTATGTGACAAGGAATTTACGAAGCGAGCGGCGTATCAACGCCACATGGACGAGGTCCATCAACCTAACTCTGTCTTTTGTCCGGTTTGCGACAAAAGTTTCACACGGAAGTCGACGTTAATAGTTCATATGAAAAAGCATTATGAGAGTGGTGAAGGTAGTTCTACAGGAACTTGTCAAATGGATGATGACGCACATATATGCGATGTTTGTGAAATGCCGTTTGAAACTGCTAACGAGTTGAATGCTCATCGTACATTACAACATGGCGATGGAGACGGTGAAGGTGAAGAAACTGGTGAGTCGGAGGATGAGGGAGTGAGTAATGTACAACAACCGGGCGAGTTTACTTGTAGCCAGTGTGGCGATGGCGTAGCCACACCCCGTGATTTGATCGCCCACCGAGCGATGCACGCCACGCCAACCAAATTCTTCTGCAACATTTGCAAAGTATACTTCACTAGAGCTCTGGATCTTTCATCGCACACCAGAGCGAGACATTCGGACAACGAAAAAGTTTGCTTCCCTTGTGCCATGTGCGACCGTTCTTACATGAATAAAAAGAGTTTGCAGCGTCATATTGAGATGGCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVQITENDDLPTNVCRKCMDNVNNWHIFKEVCERTQNKLQSLSNKDGSLLEEINVKNEPLSDEAYDDGVVIDGSYPDSENGGTVNKLQPEGPPILASLGLTPRSDKTYVDPRMDWHRVHAIMSLIQDDEAIDSLQSIEECDIVHQSDHDSDSDVELNDDITDDFINCKNGFLLKNRKYLSKYPKLSSSVNYAKAKAVVQLRKRNANLLRHYPHPKNAWQLFFTDDLLELIVASTNERISTTQKQSFQSTDVNEIKTLIGILYLHGIMRPTHQKFTDLWHRKLGIPGIQSAMKLDRFKFLLQNLSFDNDHCNSIIQFDIMKRFRKVFEIFALNCRTAFEVKDITVVDEIMIPVYGPCPFRYVIDRKPFKTGVKAVLAVDSSTFYVTNLDIITDRYFGADDIVKKLVQHLSGTGRSILVDSWYTSLKLIEILKNEYKLYSIAALNPKDNIIPPLFLSKHRINQPFMSGFLNNDVSLSSYVNEKLQCVNVLTSEPRFYKRGHSNQTTVISLYKKNRSTVRVLDVLMHYYTTAQHTNDWTISLFFTLLNIATVNAQVVWSSFNSENIIQRRGFIKELALSLLNQDDAPLLMSEIMIQRKEIARTQDSYYRNRKRYSDKDEEDEEEDEEMNESQSYAPIVNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHGFDRYTNKTTHKKTSSHLQPKLRPNPFNPKARLMPNPISHKMQLLPKNIPTKIPQKTITPAKPIPIKTIKPPQNSLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLISEPEIINSGPESPETLISEPEIASFQVEAILSEPDGFVNQHDEDMDPNQFKSNNHGQNYDTVDMDTDNEIEIARQQENECEDEQLENETDNNVDNVNDQENTATAHSDNEKQNQVEGEIKTEDGIENNVSKNDDLTKEDEDRENDDQNHQDENFEDDDDELPPVSLAPVVEINEDMQNNSYNSELNEEEEDFESADANDTVDGDENMKELDPNKVYVTKMQRDFIVKYRDIIEQINTKKCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFSHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDPKVQYKDIFNARSYSCKLCPAKFQLKQFIMKHVLDVHEDNQSKVHLACVHCGSRFKDTKLWKKHIRNGECTVYISCDLCSEKFVNMQDFNDHALAVHAGNFDLSDSHSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEETPHYCQHCDSKFEQAADLNKHIYMQHSDRSLGVQISTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQVHPGAGGYNSMDAEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGEPSSKGFPPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMAASTEEDDYNMDENGTILSTPQFNSFNFTNMTNNVQQQPQPPAQDPMPYSCELCYKRFPLRTSLWKHKRAKHGIINASAIGPDSQGPTSESSGRSSCTICKISFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQGPSKQEMGQEMEADYEQDQDSMDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQMQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLAKVQHSTPVSIAAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNNSSSGVDDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSTGTCQMDDDAHICDVCEMPFETANELNAHRTLQHGDGDGEGEETGESEDEGVSNVQQPGEFTCSQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFTRALDLSSHTRARHSDNEKVCFPCAMCDRSYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00970590;
90% Identity: iTF_00970590;
80% Identity: iTF_00970590;