Basic Information

Insect: Megathymus violae
Gene Symbol: -
Assembly: GCA_003671415.1
Location: PDGT01000015.1:2508200-2510428[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.7e-10 2.9e-07 30.7 0.1 4 37 18 51 15 56 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.7e-10	2.9e-07	30.7	0.1	4	37	18	51	15	56	0.92

Sequence Information

Coding Sequence: ATGGTTAGAAATTATAAAAAAAAGACTAAAAGGGGAGAGTGGTCACAACAGTCCATGAAAGCAGCTGTGGACAAAGTTTTGAATAAAAAATCAGGATACAGAAAGGCAGCTTTAGAATATGGAGTTCCTCAAACAACTTTGGAGCGTTATGTCACGAAAATTAAACAAGGTGAAGAAATTACCATCAGCTTACCACTGGGACCTATAAAGTCTGTTTTTTCGCAAAAAGAAGAACGAGAACTTGCAGAATATGTGAAACGTATGGAAGAACGACTTTTTGGCTTAACTACTCTCGATTTAAGGGGACTGGCATACCAGTTGGCCGTAAGAAATAATAAAAAGCACAATTTTAATAGCGAGAAAGAAATAGCAGGTGTTAATTGGCTAAATGGATTTTTAAAACGCCATCCTGAATTGTCAATTCGTAAACCAGAGGCAACTTCGGCGGCTCGCGCTATGGGCTTCAACAGAGTAGCAGTTAGAAATTTCTACCAGCTTCTCGGGGAAACATATGATGCATTACATTTAACTCCAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGACAGCGTATGAAAGCCGAATTGCTAGACCGTGCTCCTCCAGGAACAACATCGGCATGCAATCCAAAAGGCTGGATGACAGTTGAAATATTCACCATTTGGTTCAAACAGTTCATTCAATTTTCGGGAGCTTCTCCTAGCAATAAAGTGTTGCTGCTTTTAGACGGACATGTGAGTCATACTAAAAATATAGATGTTATAGATCTTGCACGACAACATGGAGTTGTAATAATTTGCTTCCCTCCTCATTGCACACATAAGTTGCAACCTGCTGATGAAGCTTTCATGAGGCCTTTAAGCACTTATTATGACCATGCTGCTTCAAATTGGTTGAGATCGCATCCAGGACGTGTGATCACCATGTTCCAAATAAGTGAAATATTTGGGCAAGCTTACATGCAAGCAGCTACGATGTCCACAGCGGTTAACAGCTTTAGGAAGTGTGGTATATGGATATGTTCTGCAAACCTTCCCTCAACAGAATCAGCACCTCATACAGGATCTAATGATAACAAAAGGCCTAAATCCGGACTTAACACACCTAACACGGACCAAGATCAATTGATTCATGAAGATCTCCTTGCACCTATTTTCTCCGCTAACCAACGTACGCCAGTTCAACTATCCAATGCTAGTTCTCCCCTACAAGATTGTTCACAATTATTTAAAGTGCAGACAGAAAATCCATTAGAAACTAGTTCTCCCATCCGAGCCGTCTGCCGTGATTTAACTTCTACTTTCGAAAATGCTTCGCCTAAAGACATATTACCGATTCCTGCAGTTCAAATGAACGAAAAAAGGAAAAACTATCGAAGAGGTAAAACAGCGGTAATAACTTCAACTCCATACAAAAAGGAACTTGAAGCTTTTAAATTTTCAAAGAAAACTCAGGCTAAAAGTAGTAAGTCATCAAAGGACGTTCCGGCTAAAAATATTAAATCGTCCAAGAACGTTACTGCCCAAAATAGTAAACTGCAGAAGAAGGCCAGGCCATCAACTTCAAGACAAGAAGATAGCGTTTGTTTTTATTGTAACGATTTGAACCACACATACCTGAAATCAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCATCATGCCCCATTTATCATTCCCCATCTTACCCCACATACGGGGCAAGACGGTTTTATTATATGTTCTTAA
Protein Sequence: MVRNYKKKTKRGEWSQQSMKAAVDKVLNKKSGYRKAALEYGVPQTTLERYVTKIKQGEEITISLPLGPIKSVFSQKEERELAEYVKRMEERLFGLTTLDLRGLAYQLAVRNNKKHNFNSEKEIAGVNWLNGFLKRHPELSIRKPEATSAARAMGFNRVAVRNFYQLLGETYDALHLTPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRMKAELLDRAPPGTTSACNPKGWMTVEIFTIWFKQFIQFSGASPSNKVLLLLDGHVSHTKNIDVIDLARQHGVVIICFPPHCTHKLQPADEAFMRPLSTYYDHAASNWLRSHPGRVITMFQISEIFGQAYMQAATMSTAVNSFRKCGIWICSANLPSTESAPHTGSNDNKRPKSGLNTPNTDQDQLIHEDLLAPIFSANQRTPVQLSNASSPLQDCSQLFKVQTENPLETSSPIRAVCRDLTSTFENASPKDILPIPAVQMNEKRKNYRRGKTAVITSTPYKKELEAFKFSKKTQAKSSKSSKDVPAKNIKSSKNVTAQNSKLQKKARPSTSRQEDSVCFYCNDLNHTYLKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHHAPFIIPHLTPHTGQDGFIICS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -